Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60190 541 / 0 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G10560 501 / 2e-169 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT1G29340 293 / 6e-89 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G46510 259 / 5e-77 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G01830 257 / 4e-76 ARM repeat superfamily protein (.1) AT3G54850 248 / 4e-73 ATPUB14 plant U-box 14 (.1) AT1G23030 225 / 9e-65 PUB11 ARM repeat superfamily protein (.1) AT1G71020 214 / 9e-61 ARM repeat superfamily protein (.1.2) AT2G28830 210 / 2e-57 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 199 / 6e-55 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029163 [exp] 1233 / 0 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030628 [exp] 887 / 0 AT1G60190 553 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030862 [exp] 883 / 0 AT1G60190 522 / 1e-177 plant U-box 19, ARM repeat superfamily protein (.1) Lus10007511 [exp] 331 / 1e-103 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 306 / 1e-94 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007317 [exp] 294 / 4e-89 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10006090 [exp] 290 / 3e-88 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 288 / 1e-87 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10040834 [exp] 250 / 2e-73 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078900 [exp] 624 / 0 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.015G074200 [exp] 620 / 0 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.008G071600 [exp] 318 / 5e-99 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.011G071400 [exp] 313 / 9e-97 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G061800 [exp] 310 / 2e-95 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.010G185900 [exp] 308 / 7e-95 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.006G107600 [exp] 282 / 2e-85 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.016G134000 [exp] 278 / 7e-84 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 258 / 2e-76 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 247 / 3e-72 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10013001 pacid=23149841 polypeptide=Lus10013001 locus=Lus10013001.g ID=Lus10013001.BGIv1.0 annot-version=v1.0 ATGATCCAGATATTTAACGGCTCACCTCGCCGGATTCTGACCTCGCCGGCGGTCCACCCCTGCGAGAGCATAGCTCCAGAGACGCTCCTATCCTCGCTGA TCAGCCTCTGCCATTCCGTCCTCGACTTCAGATCCAAGCTGACCGGCAGCAATGCGTGGAACGCTCGAGAAACCGTTCGCCAGATCGGCAACCTCCTCAT CCTCCTCGAGGAGATTCGGAGCTCGCCGGCCATTCCAAACTCACTCGTCCTTGGACTTTCGGAGCTCCACCTCACCGTCCAGAAGGTACTGTACCTGCTC GACGATTGCACCCGCGACGGCGCTAGGTTATGGATGCTGATGAAGTCCTATCGGGTCGCGAATCGGTTCCGGAGTCTGGCCCGGGCGGTCGCTAATGGTC TGGCGGTCTTACCGCTTGATGATATTGAGCTGTCATGCGAAGTGAAGGAGATAGCAGAGTTGATGACGAGACAAACTCGGAAGACGAGGATTGAAGTCAG ATTCGAGGACGAACGAGCTTACAACGAGGTTCTGATGATCTTCAGCAAGTTCGAGATCGGTGGTGTTCCTGATCGTGTAGAGATTAAGCGATTGATGGAT TACATCGGGGTGAAGCAATGGAGTGATTGTCATAAGGAGGTAAAGTTCTTGGACTCCGAAATCGAATTTCAGTTTTCGAATCAGGATATGAAATTAGAAT CGGAGCTGTTGAGTAGCTTGCTAGGGTTTATGAACTACTCGAGATGCGTGGTGTTCGATTCCATCGACTGCAAAAGCAATAGCGGCCATGCGACAGTCAG TGACCAGTTGTTCGATTGCATCAATAGCGACAACTTCCGCTGCCCGATTTCTTTCGAAATCATGAGAGATCCTGTCACTATTGAAACGGGTCACACTTAC GATCGTGGTTCGATTCTGAAATGGTTCAGAGCAGGAAATGCAATCTGTCCCAACACAGGGAACAAGTTGTTAACCACTGAACTTGTCCCCAACGTTGCTA TGAAGCAGTTGATTCAGCAGTACTGCTTGGCGAATGGCATCCCGACTATTGCTGATTCGTCTCGTAAGGGTCGAGACATAACCAGAACAGCCGGTGCGGG CAGCTTAGCTGCCGAACAGGCTACGAAAGCTGCTGCTTACTTTCTCTCTGGAGAGCTTGTCAATGGAGATTATGAAGGGAGGAACAAAGCAGCTTATGAG ATCCGGCTTCTGAGCAAAACAAGCATTTTCAACAGGTCTTGTTTGGTGGAAGCTGGTGTCATTCCGTCTGTCTTGATACTGTTAGCTTCAGAAGATGGAC CCTCTCAAGAGAATGCCATTACATCGCTTCTAAATCTCTCGAAGCATTCGAGAAGCAAAACTTTGATTGTTGATAATGGAGGGTTGAAGCTAATAGTACA CTTGCTGAAGAAAGGTCTCACTGTGGAAGCTAAGCAGCATGCAGCAGCAACACTGTTCTACCTCGCTTCAATACACGAGTACAGAAAACTGATCGGTGAA ACCACTGACGCCATCTCATCTTTGGTAGACATGGTCAAGGAATCCAACTACAGAGGTAAAAAAAACGCCCTCGTCGCAATCTACGCTCTCCTGATGCATT CAGGCAACCACAGTAACGTCATTGCATCCGGATCAGTCCCTTTGCTGCTCAATCTCCTGCTTTCCTCAGAAAGAGACGAGCTTGTGACAGACTCGTTAGC AGTTCTAGCAACCCTGGCAGAGAAATCCGAGGGAGCGAAAGCAATCGCTAGACTCGGAGCTTTGCCACAAATTGTGCAGATCTTGGCCACTGCCACTCCA AGGGCTACCAAGGAGCACTGCGTCTGCCTTTTGCTAGCTCTGTCAATCAATGACGGCGAAGATGTGGTTGCTCATCTTGTTAACATCCCTTCGCTTATGG GATCGTTATACTCGCAGCTCGGGGAAGGCACGTCTCGAGCAAGCAAAAAGGCCGGTTCTTTGATCAGGGTTCTTCATAAGTACTGTGAAAGAGGAAGCTC AAAGGCAGCAGCTTTTCCTCAGGAACGTCCTGTTCATGTCTGGTAA
AA sequence Show only first row Show all	>Lus10013001 pacid=23149841 polypeptide=Lus10013001 locus=Lus10013001.g ID=Lus10013001.BGIv1.0 annot-version=v1.0 MIQIFNGSPRRILTSPAVHPCESIAPETLLSSLISLCHSVLDFRSKLTGSNAWNARETVRQIGNLLILLEEIRSSPAIPNSLVLGLSELHLTVQKVLYLL DDCTRDGARLWMLMKSYRVANRFRSLARAVANGLAVLPLDDIELSCEVKEIAELMTRQTRKTRIEVRFEDERAYNEVLMIFSKFEIGGVPDRVEIKRLMD YIGVKQWSDCHKEVKFLDSEIEFQFSNQDMKLESELLSSLLGFMNYSRCVVFDSIDCKSNSGHATVSDQLFDCINSDNFRCPISFEIMRDPVTIETGHTY DRGSILKWFRAGNAICPNTGNKLLTTELVPNVAMKQLIQQYCLANGIPTIADSSRKGRDITRTAGAGSLAAEQATKAAAYFLSGELVNGDYEGRNKAAYE IRLLSKTSIFNRSCLVEAGVIPSVLILLASEDGPSQENAITSLLNLSKHSRSKTLIVDNGGLKLIVHLLKKGLTVEAKQHAAATLFYLASIHEYRKLIGE TTDAISSLVDMVKESNYRGKKNALVAIYALLMHSGNHSNVIASGSVPLLLNLLLSSERDELVTDSLAVLATLAEKSEGAKAIARLGALPQIVQILATATP RATKEHCVCLLLALSINDGEDVVAHLVNIPSLMGSLYSQLGEGTSRASKKAGSLIRVLHKYCERGSSKAAAFPQERPVHVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10013001 [exp]	0	1
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	4.6	0.8825
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10029163 [exp]	4.9	0.8436
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	7.3	0.8622
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10010448 [exp]	11.1	0.7747
AT4G28290			unknown protein		Lus10031644 [exp]	12.0	0.8594
AT3G47570			Leucine-rich repeat protein ki...		Lus10030852 [exp]	12.5	0.8640
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	14.7	0.8702
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	17.7	0.8233
					Lus10015828 [exp]	19.4	0.8655
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	19.4	0.8130

Compare expression of checked genes

Lus10013001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.