Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70330 494 / 5e-174 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 320 / 2e-106 Nucleoside transporter family protein (.1.2) AT4G05120 135 / 2e-35 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05130 134 / 6e-35 ATENT4 equilibrative nucleoside transporter 4 (.1) AT3G09990 130 / 2e-33 Nucleoside transporter family protein (.1) AT4G05110 129 / 3e-33 ATENT6 equilibrative nucleoside transporter 6 (.1) AT4G05140 116 / 1e-28 Nucleoside transporter family protein (.1) AT1G61630 115 / 4e-28 ATENT7 equilibrative nucleoside transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029162 [exp] 729 / 0 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10030104 [exp] 332 / 5e-111 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2) Lus10018413 [exp] 137 / 1e-35 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018523 [exp] 134 / 9e-35 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002589 [exp] 133 / 1e-34 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10039741 [exp] 132 / 2e-34 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 116 / 4e-28 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 103 / 4e-24 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002167 [exp] 45 / 2e-06 AT1G02630 95 / 3e-25 Nucleoside transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058900 [exp] 561 / 0 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.018G130000 [exp] 310 / 1e-102 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.006G068100 [exp] 298 / 7e-98 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 145 / 7e-42 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2) Potri.019G118400 [exp] 131 / 5e-34 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 119 / 1e-29 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032300 [exp] 118 / 4e-29 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 114 / 4e-28 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 97 / 7e-22 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF01733 [flax] [poplar] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Lus10013002 pacid=23149826 polypeptide=Lus10013002 locus=Lus10013002.g ID=Lus10013002.BGIv1.0 annot-version=v1.0 ATGGGTATCTCCAGCCAACCGCAACCCGACACCGAATCCGCCCTCCTCCTCTCCACCACCGACAACCGATCGGCCAAATCCGCCGCCCCCGCCGACAAAT TCCACTTTGCCTACATAATCCACTTCACCCTTGGAGTCGGATTCCTCCTCCCATGGAACGCCTTCATCACGGCGGTAGACTACTTCTCCTACATCTACCC GGACGTCTCCGTCGACCGGATCTTCGCCGTCGCCTACTTCCTCTGCGGACTCTTCTCCCTCATCGTCATCGTCTTCTATGCCCACAAGTCCGACGCCTAC CTAAGGATTAATGTGGGTCTTGTCCTGTTCGTCGCCGCTTTGCTGGTTGTCCCCGTGATGGACGGCGGGTTTATAATGGGCCGGGTCGGGTTGTACGGCG GGTTTTATGTTACAGTCGGAGCGCTGGGTGTGTGTGGGTTGGCGGATGCTTTGGTTCAAGGTGGGCTTATTGGTGCTGCTGGGGAGTTGCCTGAACGGTA TATGCAGGCTATCATTGCTGGCACTGCTGGCTCTGGGGTACTGGTTTCATTTCTAAGAATCTTCACAAAAGCTATGTACTCACAAGATTCTTCGGGGCTA AGAAACAGCGCGAACCTCTACTTCATCGCCGGGATCGTAGTAATGGCAATCTGCATCGTCTTCTACAACGTAGCACACAGGCTTCCGGTCATGCAGTACT ATGCCGACGCAAAAAAAAACGCTATCAACGAAGAAATACAAGACAAGGGCTCCATGACCGGATCCGAATGGAGATCGAGCTTGTTAGGGATCGTGGGGAG CGTTAAATGGCACGGGACCGGGATGATCCTCATCTACCTTGTCACCTTGGCCATCTTTCCCGGCTACGTAACTGAGGATGTGAAATCCGAAGCCCTTAAG GATTGGTATCCTATTCTACTTTTAAGTAGCTACAATGTGTTTGATCTAGTTGGCAAGTCGCTGACTGCAGTGTACTTGCTCGAGAATTCGAAGGTCGCGA TCGGTGCTTGCTTTGCAAGGCTGATGTTTTTCCCTCTATTCCTGGCTTGCTTGCACGGGCCCGATTTTTTCAGGACTGAGATCCCCGTGACAGTGCTGAC TGGCCTCTTGGGACTTACCAACGGCTACCTGACGAGTGTGCTGATGATTTTGGCGTCAAAGTCGGTTCCTTTGCATCAAGCTGAGACTGCCGGGATCGTC ATGGTGCTTTTCCTCACTCTCGGCCTTGCCTCGGGATCCATCGGTGCCTGA
AA sequence Show only first row Show all	>Lus10013002 pacid=23149826 polypeptide=Lus10013002 locus=Lus10013002.g ID=Lus10013002.BGIv1.0 annot-version=v1.0 MGISSQPQPDTESALLLSTTDNRSAKSAAPADKFHFAYIIHFTLGVGFLLPWNAFITAVDYFSYIYPDVSVDRIFAVAYFLCGLFSLIVIVFYAHKSDAY LRINVGLVLFVAALLVVPVMDGGFIMGRVGLYGGFYVTVGALGVCGLADALVQGGLIGAAGELPERYMQAIIAGTAGSGVLVSFLRIFTKAMYSQDSSGL RNSANLYFIAGIVVMAICIVFYNVAHRLPVMQYYADAKKNAINEEIQDKGSMTGSEWRSSLLGIVGSVKWHGTGMILIYLVTLAIFPGYVTEDVKSEALK DWYPILLLSSYNVFDLVGKSLTAVYLLENSKVAIGACFARLMFFPLFLACLHGPDFFRTEIPVTVLTGLLGLTNGYLTSVLMILASKSVPLHQAETAGIV MVLFLTLGLASGSIGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10013002 [exp]	0	1
AT1G08280			Glycosyltransferase family 29 ...		Lus10043382 [exp]	2.6	0.9068
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	4.9	0.8607
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030819 [exp]	6.3	0.8694
AT1G71940			SNARE associated Golgi protein...		Lus10014818 [exp]	9.9	0.8267
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	14.2	0.8647
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10023792 [exp]	14.5	0.8283
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	14.5	0.8516
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	14.7	0.8514
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	17.1	0.8569
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	17.3	0.8620

Compare expression of checked genes

Lus10013002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.