Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60200 289 / 1e-83 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) AT2G43370 54 / 3e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 53 / 7e-07 CSTF64 cleavage stimulating factor 64 (.1) AT4G34110 46 / 0.0001 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029161 [exp] 1265 / 0 AT1G60200 566 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10030623 [exp] 677 / 0 AT1G60200 558 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10030866 [exp] 396 / 4e-122 AT1G60200 593 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10014814 [exp] 58 / 3e-08 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 57 / 3e-08 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 57 / 5e-08 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10006055 [exp] 51 / 4e-06 AT1G71800 288 / 3e-92 cleavage stimulating factor 64 (.1) Lus10025557 [exp] 49 / 2e-05 AT2G43370 345 / 1e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027015 [exp] 48 / 3e-05 AT2G43370 347 / 3e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094700 [exp] 405 / 2e-126 AT1G60200 320 / 4e-95 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Potri.008G147100 [exp] 397 / 1e-123 AT1G60200 323 / 1e-96 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Potri.002G061200 [exp] 54 / 3e-07 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.017G033400 [exp] 47 / 4e-05 AT2G43370 341 / 8e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G107200 [exp] 45 / 0.0003 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G244600 [exp] 45 / 0.0003 AT2G29210 253 / 1e-71 splicing factor PWI domain-containing protein (.1) Potri.001G126400 [exp] 44 / 0.0007 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.007G028300 [exp] 43 / 0.0007 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G090700 [exp] 43 / 0.0007 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G036900 [exp] 44 / 0.0009 AT2G29210 263 / 6e-75 splicing factor PWI domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01480 [flax] [poplar] PWI PWI domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10013003 pacid=23149882 polypeptide=Lus10013003 locus=Lus10013003.g ID=Lus10013003.BGIv1.0 annot-version=v1.0 ATGGCCGAACCTACTTCTTCCTCCACTACGCCTGCGGCGCCGCCGGACACCAATCCAACGCCGATGGCCGCCGATAACGTAGCTACTCAGTTGGATCCTG CTCCCGCTTCCTCCCTGGCGCCAACTCACCAACCGCAATCTTCCATTCCTCCCCCGGCCAACCCTAGCCTCAACCCTAGTCCTACGAACAACATAGCTAG CACTCCGTCGGCGTTTCCTTCCTCGTACGGTCTTCCGCCTCCGCCGCCGCCTCCGATGTACGGCGCGCCGTTGCCGCCCTTGTTTCGTCCGGTTGCGCAG TTCACTACGCTTCAGAATTACCAGAGCCAGAACGCTGTCGGTGTTCAGCCTCCAGGAGTAGGGGGAGCAGGTACGGCCGCCGCGAATACAGCTCCTCCGG GGATGCCTCATTATCAGGTTCAACCTGGTCAGCATCTGAATCCGATCCTAAGACCGCCGTATGCTTCTTTCCCGAATGGCTATCCCGGAGCTACTCCTCA AGGGATCATGCCCCCTCCTGGAATTCCTCGTTTTCCGTCACACTATCCGGGGCTGATTCGTCCCAGCTTTCATCCACGTCCACCTGGTGCACCAGGTTTA CTTCCAATGGCTCGTCCTATGGTTCCAAATATTCCAGGTGTTCGCCCTTTTATCCTTCCAATTATTAGGCCAGCTGTACCTTCTGTGACACCAGCGGAGA AGCCCCAGACTACAGTATACGTAGGCAAGATATCGCCCAGTGTAAAGAATGACTTCATGCTCCCTCTTCTTCAGTCTTGTGGACCTGTTAAGAGCTGGAA ACGTGCAGAAGACCCTTCTGACGGGACTCCTAGAGGTTTTGGATTCTGCGAATTCGAAAATGCTGAAGGGATTCTCCGTGCATTACGTCTGCTCAGTAAA TTTAATATTGATGGGCAGGAACTCGTGTTAAATGTGAATCAAGCAACAAGAGAATATCTAGATCGGTATGTTGAAAAGAAAACTGAGAATTCCAAAAATC TCAAAGAAGGGGCAGCAGACAAACAGGATACTGCTCCAACTGATGCCGAGTCATCTGAAAAGACTGAACCTGCAAAATCATCGGCGGATGATTCAGAAAA TGATGATGGAAAAGACGATAAAGCCAGCCATGACCTTGCTAAGTTTGGTATTGTAACTGATGAAGATAAAGAAGGTGACAGGGCAGCAATGGAGAAGATC ACTGACATGATAGAAGAAAGGATTAAAACAAGACCCTTGCCGCCTCCCCCTCCCCCTCCGCTACTTCCTACCGACGGTTCTTTCAATCCGAATACCGAGC AAATCAAATCACGGGATGGCGACTCGGACACCGATGGACCGAGAAATGATGCAACCGAGGAAAAAAATAACGACGAGACGAGTAGTGAGTACAAGGCGGC GAATGAACATGATCGATCCGAGGTTACCACCCCTGACAGGAACAGAAGGTATGATAGAAGGAGCAGAGATGTTAAGCACGAAAAGGAACGAGAGATGGAA AGATACGAGAGGGAAGCGGAACGAGAAAGAGTTAGGAAGGAAAGGGAACAGCGGAGGAAGGTGGACGATGCTGAGCGTGAGTATGAAGAACGACTAAGAG ATTGGGAATATAGAGAGCGGGAGAAAGAGAAACAACGTCAGTATGAAAAAGAAAAGGAGAAAGAAAGAGAACGCAAGCGGGGGAAGGAAATACTTCGGGA TGAAGAAGATGAAGCCGATGAAGAATCTGGGAAAAGATGGCGGAGGAGTGTTATAGAGGAGAGGAGAAGAAAAAGACGACAAGAGAAGGAAGATGATTTG GCTGACAAGGTCAAAGAAGAGGAAGAAATTGCTGAAGCCGAGAAGAGAGCCGAAGAGGAAAAACTGCTGCAGGAAGAAAAAGAAGCACTGAAAGTTCCAT CTCCTCCCGAGCTCGCAAATGGCAGTGACAAGGCTGCTTCGCCTGATGAAATGGTTATTGAACGGGGTGAGGATGTCGACTCTGTTTATGCAAATCACAC AGGTGATGAGAGGATTCAGAACGGTGCTGATGTGGCATTATCTGTAACAACGGTTGAATCTGAAGCACATCAGGAGAATGCTAATGCTCCGACGAGAAAG TTAGGGTTTGGCTTACTCGGGGCAGGAAAACGTGCTAATGTGCCGTCAGTTTTCCATGAAGAGGAGGATGATGCACACAAGGATAAGAAAATGAGGCCTC TAGTTCCCATAGATTACTCAACAGAGGAATTGGAGGCTGTTCAACCTGTTATTACTTCCGGAACTCAACCGGCAAATCTGGTCGCAGCTGCGGAATATGC TAAACAGATATCTAATATTGCTCCCAGGGAAGAGAGATCTGAAGGTGAAAGGGATAATAAAAGGCAACGTTCTCATGACAGGTCAGGTCGCCGTGACGAG AATAGTAATCGATCCAGAGAAGATAGCAGGAAGAAGAATGATCGTGAACGGGACAGGGACCGAGATCACGATTTGGATAAGCTGAAAACCCCGGATAAAC AGAAGCTATTGGATGCAAAACAGTTGATCGATATGATCCCCAAGACTAAAGATGAGTTGTTCTCGTACGAGGTTAACTGGGCCGTTTATGACAAGCACGC GCTACATGATCGAATGAGACCTTGGATTTCCAAGAAGGTGACCGAGTTTTTGGGAGAGGAGGAAACAACACTAGTGGATTACATTGTGTCGAGTACTAAA GAACACGTGAAAGCTGCACAAATGCTGGAAATGCTTCAATCAATACTAGACGATGAAGCCGAGATGTTTGTGCTCAAAATGTGGAGGATGCTTATTTTCG AGGTTAAGAAGGTGGAGACCGGCCTAGCTTTGAAGTCTAAATAG
AA sequence Show only first row Show all	>Lus10013003 pacid=23149882 polypeptide=Lus10013003 locus=Lus10013003.g ID=Lus10013003.BGIv1.0 annot-version=v1.0 MAEPTSSSTTPAAPPDTNPTPMAADNVATQLDPAPASSLAPTHQPQSSIPPPANPSLNPSPTNNIASTPSAFPSSYGLPPPPPPPMYGAPLPPLFRPVAQ FTTLQNYQSQNAVGVQPPGVGGAGTAAANTAPPGMPHYQVQPGQHLNPILRPPYASFPNGYPGATPQGIMPPPGIPRFPSHYPGLIRPSFHPRPPGAPGL LPMARPMVPNIPGVRPFILPIIRPAVPSVTPAEKPQTTVYVGKISPSVKNDFMLPLLQSCGPVKSWKRAEDPSDGTPRGFGFCEFENAEGILRALRLLSK FNIDGQELVLNVNQATREYLDRYVEKKTENSKNLKEGAADKQDTAPTDAESSEKTEPAKSSADDSENDDGKDDKASHDLAKFGIVTDEDKEGDRAAMEKI TDMIEERIKTRPLPPPPPPPLLPTDGSFNPNTEQIKSRDGDSDTDGPRNDATEEKNNDETSSEYKAANEHDRSEVTTPDRNRRYDRRSRDVKHEKEREME RYEREAERERVRKEREQRRKVDDAEREYEERLRDWEYREREKEKQRQYEKEKEKERERKRGKEILRDEEDEADEESGKRWRRSVIEERRRKRRQEKEDDL ADKVKEEEEIAEAEKRAEEEKLLQEEKEALKVPSPPELANGSDKAASPDEMVIERGEDVDSVYANHTGDERIQNGADVALSVTTVESEAHQENANAPTRK LGFGLLGAGKRANVPSVFHEEEDDAHKDKKMRPLVPIDYSTEELEAVQPVITSGTQPANLVAAAEYAKQISNIAPREERSEGERDNKRQRSHDRSGRRDE NSNRSREDSRKKNDRERDRDRDHDLDKLKTPDKQKLLDAKQLIDMIPKTKDELFSYEVNWAVYDKHALHDRMRPWISKKVTEFLGEEETTLVDYIVSSTK EHVKAAQMLEMLQSILDDEAEMFVLKMWRMLIFEVKKVETGLALKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	0	1
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	2.8	0.8143
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	6.9	0.7359
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	7.1	0.7626
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	8.0	0.7944
AT5G09880			Splicing factor, CC1-like (.1)		Lus10000826 [exp]	8.5	0.7861
					Lus10021106 [exp]	9.8	0.7221
AT3G52320			F-box and associated interacti...		Lus10038541 [exp]	12.2	0.7598
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	13.1	0.7637
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	21.5	0.7440
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	22.8	0.7571

Compare expression of checked genes

Lus10013003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.