Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40270 468 / 1e-162 HD domain-containing metal-dependent phosphohydrolase family protein (.1) AT5G40290 422 / 7e-145 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029160 [exp] 799 / 0 AT5G40270 623 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1) Lus10022228 [exp] 411 / 2e-139 AT5G40270 665 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G190200 [exp] 459 / 2e-159 AT5G40270 615 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1) Potri.009G147800 [exp] 456 / 4e-158 AT5G40270 685 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1) Potri.009G147750 [exp] 51 / 8e-08 AT5G40270 60 / 3e-11 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10013004 pacid=23149845 polypeptide=Lus10013004 locus=Lus10013004.g ID=Lus10013004.BGIv1.0 annot-version=v1.0 ATGGGAGCTTCCATCAACGACAGTTCCAGCGCCTCGAACTTCGCTCCTTACTGGCAGGATCGAAGGTCCACGAAGCAGGTCCTCGATAATGTACACGGAT ACATATATTTGGACCCGCTCGCTCTGAAGTTCGTTGATACTGAACAGTTTCAGAGGCAAGTTCAACTTATAGTACTACACGATGCTGATTGTCGTGTGGA GGATTTTGATATCCAGACTGTGAAACTTGCTGCCATTACCTTCTTACTTGTGTGCTTATTGCGTCTCTTGCCTGCCTTTAAAGGATTATTGCATGATATT GGCCACGGACCATTCAGTCACATGTTTGAGCGTGGATTTTTGCCGCAGTTTCTTAATGGCTCCACGTGGTCCCATGAAGACATGTCCATTAAGATGATAG ACTACATAGTTGACAAACACCACATAGACATTGATCCGGAATGCTTAAAGCAAGCAAAGGAAATGGTCATTGCAAGTACTGAACATGCTCAACGTAATAA TTCGTCTGGTAAAAAGTTCTTATATGACATTGTTGCCAATGGTCGAAACGGAACAGATGTTGATAAGTTTGACTACCTTGCTCGTGATACGAGGGCTTGC GGGCTTGGCAACAGTTTTATGTTTCAGAGAACGTTTTTCAGATCTAACGGTCTACAAGCTGTTTTCAACTCGTGCAGAAATGCATCGCACGGGATCTCTG CTCATCAGGGGATAGAACTTATGGTTATCGATGCCCTGGCAAAAGCAAATGACACCCTTAAAATTTCCGAGTCAGTTCAGGATCCCGGCGAATTTTGGAA GATAGATGACTCGATTTTGAAGAGAATTGAAGTTGACGAACGTCCAGAACTCAAAGAGGCCAGAGAACTAGTCCTACGCATTAGGAGAAGAGATATATAC CAGTTCTGCAATGAGTTTTCTGTTCCTAAAGACAAGCTACACCATTTCAAGGACGTCACTCCGCAGGAAATTATTTGCTCTCAGCAGAACTCTACGGATG TTACATTGAAAGAAGAAGACATTGCTGTGGCCACTATTAAGATCGACTTGACCCGTGGAATGTTCAATCCTCTCGAGAAGTATGTGAAAATTGCGTTCTT TCTTTCTTCTGCTTGCTTCATTACCTTCGAATTTACTTCTCTCTTGTTTCTGATATTTTCCTTGTGCACCTCCACTTCTACCAGCATCAAGTTTTTCCAG GACTATTCAACCAAGGATAAGTTCAATATACCAATGAACCGCATCAGCCACTTGGTTCCTGCTGTGTGCCAAGACAAGATCGTGAGAGTTTACGCAAAGA AGCCTGAACTGGTGGAGGCAATTTCTCAGGCCTTTGAGAACTTTCAGATGAAAACATATGGCATGAAAGCACAGGTATGTGCCACTCCTGAGAAGAAGAA GAACCGCAAAAGGTTGTACCCTTACTGA
AA sequence Show only first row Show all	>Lus10013004 pacid=23149845 polypeptide=Lus10013004 locus=Lus10013004.g ID=Lus10013004.BGIv1.0 annot-version=v1.0 MGASINDSSSASNFAPYWQDRRSTKQVLDNVHGYIYLDPLALKFVDTEQFQRQVQLIVLHDADCRVEDFDIQTVKLAAITFLLVCLLRLLPAFKGLLHDI GHGPFSHMFERGFLPQFLNGSTWSHEDMSIKMIDYIVDKHHIDIDPECLKQAKEMVIASTEHAQRNNSSGKKFLYDIVANGRNGTDVDKFDYLARDTRAC GLGNSFMFQRTFFRSNGLQAVFNSCRNASHGISAHQGIELMVIDALAKANDTLKISESVQDPGEFWKIDDSILKRIEVDERPELKEARELVLRIRRRDIY QFCNEFSVPKDKLHHFKDVTPQEIICSQQNSTDVTLKEEDIAVATIKIDLTRGMFNPLEKYVKIAFFLSSACFITFEFTSLLFLIFSLCTSTSTSIKFFQ DYSTKDKFNIPMNRISHLVPAVCQDKIVRVYAKKPELVEAISQAFENFQMKTYGMKAQVCATPEKKKNRKRLYPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40270			HD domain-containing metal-dep...		Lus10013004 [exp]	0	1
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	1.7	0.8651
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	6.9	0.7951
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10038921 [exp]	7.7	0.7814
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10036912 [exp]	11.3	0.7103
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10032295 [exp]	11.4	0.8175
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10023606 [exp]	14.7	0.7352
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	16.1	0.8121
					Lus10010548 [exp]	16.9	0.7614
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10030133 [exp]	21.2	0.7749
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10017542 [exp]	28.6	0.7490

Compare expression of checked genes

Lus10013004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.