Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60230 579 / 0 Radical SAM superfamily protein (.1) AT3G19630 176 / 1e-50 Radical SAM superfamily protein (.1) AT2G39670 156 / 1e-42 Radical SAM superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029159 [exp] 698 / 0 AT1G60230 468 / 2e-163 Radical SAM superfamily protein (.1) Lus10000081 [exp] 405 / 2e-142 AT1G60230 332 / 9e-114 Radical SAM superfamily protein (.1) Lus10002698 [exp] 160 / 4e-44 AT2G39670 595 / 0.0 Radical SAM superfamily protein (.1.2) Lus10000953 [exp] 162 / 2e-43 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10020989 [exp] 153 / 3e-42 AT3G19630 569 / 0.0 Radical SAM superfamily protein (.1) Lus10005409 [exp] 149 / 1e-40 AT3G19630 568 / 0.0 Radical SAM superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040700 [exp] 624 / 0 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1) Potri.008G056500 [exp] 165 / 3e-46 AT2G39670 622 / 0.0 Radical SAM superfamily protein (.1.2) Potri.001G294900 [exp] 156 / 2e-43 AT3G19630 577 / 0.0 Radical SAM superfamily protein (.1) Potri.010G203300 [exp] 49 / 4e-06 AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013005 pacid=23149842 polypeptide=Lus10013005 locus=Lus10013005.g ID=Lus10013005.BGIv1.0 annot-version=v1.0 ATGGAGATGGGCTGTGTGTGGATGAGGCGAATCCAACTCGCCGCCGGACCCAACTCTATCTTTCTATTTAACCGACGTCCGTTAATCCGTTCATCCTCCA CTAACCTTTTACATCGTATATCCTCGCCGCCAGCAACACCACATACCATCACCCTCAATTTCACTCCCCGCCGTCGCTTCTTTTCAAAGGCGGCCTCCTC CTCGTCGGCCCATTCTCTGGCCGATGCCTCTCCCCACAGCTCCGTGGGAATCGGCGACACTGAAGCTACTTCTCTGGATGAGGATGCTAAGGTTCTGCTC AAGGAAATGAGATACTCTGAACTTGAAAAGTGGGTACAGTCCCATGGGTTCAGACCTGGTCAAGCTATGATGCTGTGGAAGCGTTTGTATGGCTTGAATA ACACCTGGGCACAGTATGTTGATGAATTGGAAGGCTTGAACAAAGACTTCAAGAAGATGCTGGGTGAACAAGCTCGGTTCCAGGCTTTGACCTTGCAAGA AGTTGTAACTGCATTTGATGGAACTAGAAAGATTTTATTCAGGTTGAACGATGGACTTGTTATAGAAACAGTAGTAATACCATGCGATAGAGGCAGGACC ACGGTATGTGTCTCGAGTCAGGTGGGCTGCGCCATGAATTGCCAGATGGGTTTGACTAGACATTTGACGACAGCCGAGATAGTCGAGCAAGCTGTATTTG CAAGGAGATTGCTCACGAGTGAAGTTGGTTCCATCACAAATGTAGTCTTCATGGGAATGGGAGAACCACTGCAGAACATAGACAACGTGATAAAAGCAGC TGACATAATGACTGATGAACAGGGGCTTCAGTTTAGTCCTCGCAAGGTCACTGTTTCGACGAGCGGCCTTGTTCCCCAACTCAAGCGCTTTCTCCGCGAA TCGAATTGTGCATTGGCTGTCAGTCTCAACGCAACAACTGATGAGGTGAGAAACTGGATCATGCCAATCAACCGGAAGTACAACATCAGCTTGCTTCTCG AAACCCTGAGAGAGGAGCTTCAATCCAGGAACAACTACAAAGTGCTGTTCGAGTACGTAATGCTCGCTGGAGTAAATGACAGCTTGGATGATGCAAGGAG GCTCATCGATCTCGTGAAGGGCATTCCGTGCAAGGTGAATCTCATTCAGTTCAATCCGCACTGTGGATCCCCGTTCAAGCCGACCGGCATAGACCGTATT ATCGAGTTCCGCAACACGCTTGCAGCAGGGAAATGTGCTGCGTTTCTGAGGGAGAGCAGAGGTGACGATCAAATGGCGGCTTGTGGCCAGCTGGGGAAGC CTGGGACCATCCAAGCTCCCATGCTTAGAGTCCCTGAACAATTCAAGGTTGCTGTAAATGGTTAG
AA sequence Show only first row Show all	>Lus10013005 pacid=23149842 polypeptide=Lus10013005 locus=Lus10013005.g ID=Lus10013005.BGIv1.0 annot-version=v1.0 MEMGCVWMRRIQLAAGPNSIFLFNRRPLIRSSSTNLLHRISSPPATPHTITLNFTPRRRFFSKAASSSSAHSLADASPHSSVGIGDTEATSLDEDAKVLL KEMRYSELEKWVQSHGFRPGQAMMLWKRLYGLNNTWAQYVDELEGLNKDFKKMLGEQARFQALTLQEVVTAFDGTRKILFRLNDGLVIETVVIPCDRGRT TVCVSSQVGCAMNCQMGLTRHLTTAEIVEQAVFARRLLTSEVGSITNVVFMGMGEPLQNIDNVIKAADIMTDEQGLQFSPRKVTVSTSGLVPQLKRFLRE SNCALAVSLNATTDEVRNWIMPINRKYNISLLLETLREELQSRNNYKVLFEYVMLAGVNDSLDDARRLIDLVKGIPCKVNLIQFNPHCGSPFKPTGIDRI IEFRNTLAAGKCAAFLRESRGDDQMAACGQLGKPGTIQAPMLRVPEQFKVAVNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	0	1
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10005156 [exp]	1.4	0.9513
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	2.8	0.9414
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	4.0	0.9367
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	5.5	0.9347
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	5.5	0.9411
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	6.0	0.9307
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	6.7	0.9351
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	8.9	0.9264
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	10.6	0.9315
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018435 [exp]	11.7	0.8941

Compare expression of checked genes

Lus10013005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.