Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23790 246 / 5e-76 Plant protein of unknown function (DUF936) (.1) AT1G70340 211 / 8e-63 Plant protein of unknown function (DUF936) (.1) AT3G19610 47 / 3e-05 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029158 [exp] 574 / 0 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10030619 [exp] 270 / 3e-85 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1) Lus10030870 [exp] 255 / 3e-79 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1) Lus10041407 [exp] 166 / 2e-48 AT1G23790 135 / 7e-37 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 68 / 8e-13 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192300 [exp] 332 / 2e-108 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.010G038600 [exp] 284 / 5e-92 AT1G23790 285 / 1e-91 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10013006 pacid=23149839 polypeptide=Lus10013006 locus=Lus10013006.g ID=Lus10013006.BGIv1.0 annot-version=v1.0 ATGGTTTTGAAGCCGGTTCCGTTGGATTTCGACCAGTGTTGTACTACTCCGGCGAAGCAGAGGGCTAGTTCTGTGAAGAAGCCCGTGCTTGGAAGGAGAT CTAATTACAAAGACGTCGGCGGCGGTGAAGGAGGAGGGTTCCGGTGCTCGCTCGGAGGTGGGACGGTGTCAAAGATGGCGGAGAGTCCGTTGTTGAGGAA GAGCTGCGCAGTGCCGTCTTCCTCTGCGTCGAAGTTTCCGAGGAGTCGGAGCGTTTGCGGTGGCGGCGATCGAGACTCCAGGATTCCGATTAGCCCCTGC ATCTCATCTGCTAAGAAAAGCTCCACTCCTCCACCGAGCTTGAGGAATAAGAAAGTGCTGAAATTGGGTGACGCGGAATTGCAGAACTTAGCTGGTTGTA ATCCGGTCACCGGCGATCTTGAAACCAGTTTGCCGTTTAATATGCCAGGAAAGCTGAGCACGCTTGCCAAGGAAGCAATGCAGCAGAGGGAAACTGCACA GAAGATAGCACAACAAGCATTAAGAGACGCTTCAGCTACTGAAACATTAGTCAGATCTCTCAAGATGTTCTCAAACTTAACCAAGACAGCAAGGTCAGAA TCACCAGCATCCTGTTTCGAGAAGTTCCTCGAATTCCACTCCCAAATTGAACAGGCTATCAACGACATGCTCTCCATCCAAGCAGCAACACCCACAAACT CCACAGCAGCAGAATCAGCTCAAAACCCGAAAAGAGCCAAGCAAATGAATCCCGAGGAAGAGTTTCCGGTCCTGAACGAGCTCATCCAGAACCAATCCAA GAGCACGGAATCCAAGAGAAGAACAGCACTCTACAAGTCGATCGCTTCGTTCCCAAGCGAGCAACAAAAGCTGCATTCTTCCAGCACAAGGCTCCTCAGA TTGACCGCCAGGGCTAAAGCTATGCCATCGAGTCCGCTCGGGAAGCTGCAGTTTGAATCAGTTTGTGAGAATGATGAGAACAGGAAACCAACTAGTACTA GTAGTACTACTACATTGTCCGGTACCGGGTTTTCGAGCACGATTAAGCTGGGAAAGGAGATTGAGGAGGAGGCGGGGAACTGGTTCATGGAGTTTGTGGA GAAGGCGTTGGAGGCTGGGATGATGAAGAGATCTTCTAGGAAGAATGATGTTAAAGGAGGTGATGCAGGTAAGAGGGTGGTGCCACAATCTGTGCTGCTG AAGGTGATTAACTGGGTGGAGGTTGAGCAATGTGATGGTAGTAAGAGGCGAGTTCATCCGAAAGCTGCTCAAGTTGCTAGGAGGTTAAGGATCAAGATGA AGAACCCTTAA
AA sequence Show only first row Show all	>Lus10013006 pacid=23149839 polypeptide=Lus10013006 locus=Lus10013006.g ID=Lus10013006.BGIv1.0 annot-version=v1.0 MVLKPVPLDFDQCCTTPAKQRASSVKKPVLGRRSNYKDVGGGEGGGFRCSLGGGTVSKMAESPLLRKSCAVPSSSASKFPRSRSVCGGGDRDSRIPISPC ISSAKKSSTPPPSLRNKKVLKLGDAELQNLAGCNPVTGDLETSLPFNMPGKLSTLAKEAMQQRETAQKIAQQALRDASATETLVRSLKMFSNLTKTARSE SPASCFEKFLEFHSQIEQAINDMLSIQAATPTNSTAAESAQNPKRAKQMNPEEEFPVLNELIQNQSKSTESKRRTALYKSIASFPSEQQKLHSSSTRLLR LTARAKAMPSSPLGKLQFESVCENDENRKPTSTSSTTTLSGTGFSSTIKLGKEIEEEAGNWFMEFVEKALEAGMMKRSSRKNDVKGGDAGKRVVPQSVLL KVINWVEVEQCDGSKRRVHPKAAQVARRLRIKMKNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23790			Plant protein of unknown funct...		Lus10013006 [exp]	0	1
AT4G17240			unknown protein		Lus10039062 [exp]	1.7	0.9190
AT2G33400			unknown protein		Lus10011782 [exp]	6.0	0.8936
AT2G25270			unknown protein		Lus10001929 [exp]	8.7	0.9095
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	10.0	0.9046
AT5G03870			Glutaredoxin family protein (....		Lus10017029 [exp]	10.6	0.9138
					Lus10001684 [exp]	16.9	0.9126
AT2G42110			unknown protein		Lus10016261 [exp]	18.7	0.8874
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	19.5	0.8756
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	20.1	0.8621
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	21.1	0.9040

Compare expression of checked genes

Lus10013006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.