Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23790 251 / 4e-81 Plant protein of unknown function (DUF936) (.1) AT1G70340 238 / 3e-76 Plant protein of unknown function (DUF936) (.1) AT1G08760 162 / 4e-46 Plant protein of unknown function (DUF936) (.1) AT4G13370 152 / 1e-42 Plant protein of unknown function (DUF936) (.1) AT3G14170 146 / 5e-41 Plant protein of unknown function (DUF936) (.1) AT3G19610 117 / 5e-30 Plant protein of unknown function (DUF936) (.1) AT2G31920 97 / 4e-23 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029158 [exp] 338 / 1e-114 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10030619 [exp] 240 / 8e-77 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1) Lus10030870 [exp] 233 / 1e-73 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 165 / 5e-47 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 165 / 1e-46 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 143 / 3e-40 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 142 / 2e-39 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1) Lus10019398 [exp] 139 / 7e-38 AT4G13370 646 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10043255 [exp] 137 / 4e-37 AT4G13370 652 / 0.0 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192300 [exp] 278 / 1e-90 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 166 / 3e-47 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 163 / 3e-46 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 143 / 6e-40 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 142 / 6e-39 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 129 / 2e-34 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 118 / 1e-30 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10013007 pacid=23149864 polypeptide=Lus10013007 locus=Lus10013007.g ID=Lus10013007.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTGGCGCCGGGAATCCTCTCCAAGCTCCTGGAAGCAATGAACACGGGAACCAAACCTACGAGCGAGCACCGGAGCTCGCTCCTCCAGGTCA CCGACATCGTCCCGGCCGATCTGGACGAGAAATCCCTCTTCCCCAAGCAAGGATTCTACATCAAAGTATCGGATTCTTCACACTCCATCTACGTCTCCCT GCCTTCCGACCAGGACGACTTCGTCCTCAGCAACAAGATGCAGCTGGGTCAGTTCATCTACGTCGACAGATTGGAGCCAGGGTCCCCTGTTCCCGTCGTC AGGGGCGCCAAACCGCTCCCCGGCCGGCACCCGATGGTGGGCACGCCGGAGCCGTTGATGAGTTTGAGAGAGAAAGGGAACAGGAAAGTAGAGCTTGATT TCCCCGGGAGAGTTTCGGGGAATCGGAGAGGCTCGTGGGGGATCGGGAAAGGAAATGATGAAGATGATTGTTCGAGTCGGATTCGTTCGCCGATGGTTTT GAAACCGGTTCCGTTGGATTTCGACCAGTGTTCTACTCCGGCGAAGCAGAGGGCTACCTCTGTGAAGAAGCCGGTCTTCGTAAGGAGATCGAATTACAGA GACGGCGAAAGCGCCGCCGCCGCCAGCGGAGGGTTCGGAGCCGCTGATGAGTTTGAGAGGGAAAGGGGAAAGGAAAGTAGAGCTTGA
AA sequence Show only first row Show all	>Lus10013007 pacid=23149864 polypeptide=Lus10013007 locus=Lus10013007.g ID=Lus10013007.BGIv1.0 annot-version=v1.0 MAALAPGILSKLLEAMNTGTKPTSEHRSSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSSHSIYVSLPSDQDDFVLSNKMQLGQFIYVDRLEPGSPVPVV RGAKPLPGRHPMVGTPEPLMSLREKGNRKVELDFPGRVSGNRRGSWGIGKGNDEDDCSSRIRSPMVLKPVPLDFDQCSTPAKQRATSVKKPVFVRRSNYR DGESAAAASGGFGAADEFERERGKESRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	0	1
AT3G15550			unknown protein		Lus10025758 [exp]	1.4	0.9738
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	2.8	0.9506
AT3G52110			unknown protein		Lus10039611 [exp]	3.5	0.9627
AT2G20590			Reticulon family protein (.1.2...		Lus10039890 [exp]	4.9	0.9611
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	5.0	0.9570
AT1G04030			unknown protein		Lus10008231 [exp]	5.9	0.9507
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	6.6	0.9592
AT1G04030			unknown protein		Lus10003613 [exp]	11.2	0.9371
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10018608 [exp]	12.6	0.9436
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	13.4	0.9413

Compare expression of checked genes

Lus10013007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.