Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70350 43 / 4e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029157 [exp] 110 / 6e-32 AT1G70350 59 / 2e-12 unknown protein Lus10030618 [exp] 55 / 2e-10 AT1G70350 62 / 1e-13 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013008 pacid=23149853 polypeptide=Lus10013008 locus=Lus10013008.g ID=Lus10013008.BGIv1.0 annot-version=v1.0 ATGGCGGCCAACGGAGCAAGAAGAGTCATCCAATGCTCTTCAACGAAGACCCTTTTCTCCGGAGCTAGCTCAGTCACACGAGGAGGGTCAAGGTCTTCTC CTTTTGCTTGTAAAGCTTCCAGCTTTACTCCTGGCATCTCCCCTTCTAAGCCCAGCTTCTCAATCTCATCCCGTAGACCTACACTCTCCAGGTTTCCAGT GGAGTTGGGTGGTGCGCTTAGTATGATGCCTTTGCATACTGCAACTTCCTCTGCTTTGTTCACTTCGTTGCTATCCTTGCACAGCCAGAGCTGGGGTTGT CTATCAGAAGGTATTTGTCTCCTCATCTTGATGCTTCTCCATCATTGTGCTACATTTAGAAACACAATATGCATGTATGTGAACAAAGCTGCTGAATTTT TTCCCAACAAGTAG
AA sequence Show only first row Show all	>Lus10013008 pacid=23149853 polypeptide=Lus10013008 locus=Lus10013008.g ID=Lus10013008.BGIv1.0 annot-version=v1.0 MAANGARRVIQCSSTKTLFSGASSVTRGGSRSSPFACKASSFTPGISPSKPSFSISSRRPTLSRFPVELGGALSMMPLHTATSSALFTSLLSLHSQSWGC LSEGICLLILMLLHHCATFRNTICMYVNKAAEFFPNK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70350			unknown protein		Lus10013008 [exp]	0	1
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	1.4	0.9092
AT1G54650			Methyltransferase family prote...		Lus10005515 [exp]	3.5	0.8990
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	3.5	0.9028
AT3G54200			Late embryogenesis abundant (L...		Lus10009831 [exp]	4.9	0.8895
AT2G19740			Ribosomal protein L31e family ...		Lus10042028 [exp]	5.7	0.8907
AT1G15420			unknown protein		Lus10007894 [exp]	5.9	0.8905
AT2G20450			Ribosomal protein L14 (.1)		Lus10024918 [exp]	7.5	0.8836
AT3G02080			Ribosomal protein S19e family ...		Lus10020836 [exp]	8.8	0.8757
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	9.5	0.8808
AT3G23390			Zinc-binding ribosomal protein...		Lus10013436 [exp]	9.9	0.8827

Compare expression of checked genes

Lus10013008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.