Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70370 808 / 0 PG2 polygalacturonase 2 (.1.2) AT1G23760 781 / 0 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1) AT1G60390 744 / 0 PG1 polygalacturonase 1 (.1) AT5G25610 125 / 3e-31 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 100 / 2e-23 ATUSPL1 unknown seed protein like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029156 [exp] 1183 / 0 AT1G70370 820 / 0.0 polygalacturonase 2 (.1.2) Lus10034881 [exp] 667 / 0 AT1G70370 682 / 0.0 polygalacturonase 2 (.1.2) Lus10033417 [exp] 662 / 0 AT1G70370 681 / 0.0 polygalacturonase 2 (.1.2) Lus10022114 [exp] 140 / 5e-36 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 139 / 1e-35 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007011 [exp] 131 / 6e-34 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10026333 [exp] 126 / 7e-33 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10032324 [exp] 123 / 3e-31 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10003263 [exp] 123 / 8e-31 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G190000 [exp] 881 / 0 AT1G70370 841 / 0.0 polygalacturonase 2 (.1.2) Potri.010G040800 [exp] 881 / 0 AT1G70370 819 / 0.0 polygalacturonase 2 (.1.2) Potri.012G079200 [exp] 732 / 0 AT1G70370 747 / 0.0 polygalacturonase 2 (.1.2) Potri.006G243700 [exp] 140 / 2e-36 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 140 / 4e-36 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 135 / 1e-34 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 127 / 6e-32 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.009G114600 [exp] 125 / 8e-32 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1) Potri.T012700 [exp] 125 / 1e-31 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 119 / 1e-29 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [flax] [poplar] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Lus10013009 pacid=23149846 polypeptide=Lus10013009 locus=Lus10013009.g ID=Lus10013009.BGIv1.0 annot-version=v1.0 ATGCAGGTTGTTTCTGCCTCGGAGACTAATCCCTTCACTCCCAAGGCGGCTCTGGTTCGCTACTGGAACAAGGAGATCCGTACGGGACTCCCGAAATCCG ATTTCCTAATCTCGAAAGCTTCACCGCTGACGACGGTCCAGTCGGCGCTGTTCGCCAAGCTGGCGGCGCAGAACGCTCTGTCGACTCAGCTCCCGGCGTT CTGCTCCGCCGCGAAGCTGCTCTGCTTCCCGGAGTTGGCAGCCAGCTTGGAGAAGCACGACAAAGACTCCAACTTTGCCGTCTATTCCGACAAGAACTTC ACCAATTACGGCACGACCGCTGCCGGAGGGATGGACTCGTTCAAGAACTACTCCGACGGGGAGAATCTGCCTTTAGATTCGTTCCGCCGCTACAGCCGCG ACGCCGCTGGCCACATCGACAAGTTTGCGAACTACGCTCCCGGGACTAACGTTGCTGACCAGAGCTTCAACACCTACGCCGCTGGTGCTGTCGGCGGCAG GGGAGACTTTAAGGCGTACATGGAGCAGATAAACGTACCCAATCTTCGGTTCACTTCTTACTCGCAAGAGGCCAACGGTAGGGCCCACGGGTTCACGAGC TATAATAAAGATTCCAATTCCGGGAACCAAGGGTTTACTAGCTACGGCAAGAACGGGAACGGGGTACCGAATGAGTTCGCCGGGTACGGCGAGAACGCGA ACGTAATCGGGTCGGGTTTCACGAACTACGCCGAGACTGGGAACGGAGGTAACGATACTTTTACTTCGTATGGGTTTAACGGGAATGTGCCGGAGAATAA TTTCAGGAACTACGGCGATGGTGGAAACGGCGGCGTCGATGGATTTACTTCTTACAGAGACCAGTCAAACGTCGGGGACGATTCTTTCCAGTCGTATGCT AAGAACTCCAATGCGGCGAAGGTCGATTTCGTCAATTATGGCAAATCGTTCAACGAAGGGACTGATAAATTCACCGGGTACGGACAAGGAGCGAACGGGG AGAAGATTGGATTCAAAGGCTACGGAGTGAATAATACATTCAAGGATTATACAAAGACTGCCGGAGCTGTAACATTCGCCGGTTACACGAATCGGAGTTC TACTTCGGAGGAGATGAAGGTGAGTGGCAGATTGGTAAATAAGTGGGTGGAGCCGGGCAAATTCTTCAGGGAGAAGGATCTGAAAAGGGGGAATACAATG CCGATGCCGGACATTCGAGACAAAATGCCGGAAAGGTCGTTCCTACCCCGGACGATTATCTCGAAGCTCCCATTCGCGAGCTCAAAGATCGATGAGCTGA AGCAGATCTTCCGCGCGGAGGAGAACTCATCGATGGAGGCGATGATCAAGAACTCGCTGACCGAGTGCGAGAGGGCGCCGAGTCCCGGCGAGACGAAGCG GTGCGTCGGGGCGGCGGAGGACATGATCGACTTCGCCACGTCGGTGCTCGGCCGTAACGTGGAGCTGCGGACGACGGCGAACGTCAAGGGGTCGAAGCAG GACATCTTGATCGGAGATGTAAAGGGAATCAACGGCGGTAAAGTCACGAAATCCGTGTCTTGCCACCAGAGTTTGTACCCTTACCTACTCTATTACTGCC ACTCGGTTCCCAAAGTCCGGGTCTACGAAGCGGACATTATCGACCCGAATAGCAAGACCCGGGTCAACCACGGTGTCGCCATCTGTCACATTGATACGTC GTCGTGGAGCCCCACCCACGGAGCTTTCCTGGCTCTGGGGTCGGGTCCGGGTCGGATCGAGGTGTGCCACTGGATATTCGAGAACGACCTGACTTGGACC ATTGCTGATTCGGCTTCGGATTAA
AA sequence Show only first row Show all	>Lus10013009 pacid=23149846 polypeptide=Lus10013009 locus=Lus10013009.g ID=Lus10013009.BGIv1.0 annot-version=v1.0 MQVVSASETNPFTPKAALVRYWNKEIRTGLPKSDFLISKASPLTTVQSALFAKLAAQNALSTQLPAFCSAAKLLCFPELAASLEKHDKDSNFAVYSDKNF TNYGTTAAGGMDSFKNYSDGENLPLDSFRRYSRDAAGHIDKFANYAPGTNVADQSFNTYAAGAVGGRGDFKAYMEQINVPNLRFTSYSQEANGRAHGFTS YNKDSNSGNQGFTSYGKNGNGVPNEFAGYGENANVIGSGFTNYAETGNGGNDTFTSYGFNGNVPENNFRNYGDGGNGGVDGFTSYRDQSNVGDDSFQSYA KNSNAAKVDFVNYGKSFNEGTDKFTGYGQGANGEKIGFKGYGVNNTFKDYTKTAGAVTFAGYTNRSSTSEEMKVSGRLVNKWVEPGKFFREKDLKRGNTM PMPDIRDKMPERSFLPRTIISKLPFASSKIDELKQIFRAEENSSMEAMIKNSLTECERAPSPGETKRCVGAAEDMIDFATSVLGRNVELRTTANVKGSKQ DILIGDVKGINGGKVTKSVSCHQSLYPYLLYYCHSVPKVRVYEADIIDPNSKTRVNHGVAICHIDTSSWSPTHGAFLALGSGPGRIEVCHWIFENDLTWT IADSASD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10013009 [exp]	0	1
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10008190 [exp]	3.9	0.8097
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	4.9	0.8075
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	6.0	0.8031
AT1G68350			unknown protein		Lus10034340 [exp]	6.3	0.7920
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041013 [exp]	10.9	0.7497
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	13.2	0.7919
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	16.1	0.7992
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10011583 [exp]	19.4	0.7419
AT5G62550			unknown protein		Lus10024245 [exp]	21.7	0.7709
AT5G58160			actin binding (.1)		Lus10024450 [exp]	23.0	0.7660

Compare expression of checked genes

Lus10013009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.