Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) AT1G10590 203 / 1e-68 Nucleic acid-binding, OB-fold-like protein (.1.2.3) AT2G33845 181 / 3e-59 Nucleic acid-binding, OB-fold-like protein (.1) AT4G28440 165 / 2e-53 Nucleic acid-binding, OB-fold-like protein (.1) AT1G03810 157 / 3e-50 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029155 [exp] 273 / 3e-96 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030617 [exp] 210 / 3e-71 AT1G23750 229 / 7e-79 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030871 [exp] 208 / 2e-70 AT1G23750 226 / 2e-77 Nucleic acid-binding, OB-fold-like protein (.1) Lus10015411 [exp] 175 / 3e-57 AT2G33845 186 / 4e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013989 [exp] 172 / 6e-56 AT4G28440 186 / 3e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002172 [exp] 157 / 4e-50 AT2G33845 189 / 1e-62 Nucleic acid-binding, OB-fold-like protein (.1) Lus10039889 [exp] 151 / 6e-48 AT2G33845 185 / 1e-60 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041000 [exp] 218 / 1e-74 AT1G23750 234 / 1e-80 Nucleic acid-binding, OB-fold-like protein (.1) Potri.008G189900 [exp] 213 / 1e-72 AT1G23750 239 / 9e-83 Nucleic acid-binding, OB-fold-like protein (.1) Potri.011G114800 [exp] 186 / 1e-61 AT2G33845 214 / 3e-72 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G396100 [exp] 182 / 6e-60 AT1G23750 194 / 5e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.007G137600 [exp] 178 / 9e-59 AT4G28440 193 / 2e-64 Nucleic acid-binding, OB-fold-like protein (.1) Potri.017G014400 [exp] 171 / 7e-56 AT4G28440 194 / 9e-65 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013010 pacid=23149801 polypeptide=Lus10013010 locus=Lus10013010.g ID=Lus10013010.BGIv1.0 annot-version=v1.0 ATGGCAGAGGCAAAACAAGAACTGAGGAAGCCTGTATTCACCAAGGTCGAGCAACTTCGTCCAGGGACTACCGGGCACACCTTGACAGTAAAGGTTATAA GCACAAAAATGGTGAAGGTGGGTCGTTCTGATGGTCCTCAAATGCGCCAAAATCGACGTGCAGAGTGTTTGGTCGGCGATGAGACTGGGATTATTATATT CACCGCAAGGTTTGATCAAGTGGACTTAATGAAGGAAGGAACAACGGTGATCCTCCGCAATGCAAAAATCGACATGTACAAAGGATCGATGAGGCTTGCT GTGGACAAGTGGGGACGTATTGAAGAAGTGTCCGAGCCTGAAAGCATCAAAGTTAAGGAAGACAACAACCTCTCGCTCATCGAATATGAGGTCATCACCG TTGTAGAAGACTGA
AA sequence Show only first row Show all	>Lus10013010 pacid=23149801 polypeptide=Lus10013010 locus=Lus10013010.g ID=Lus10013010.BGIv1.0 annot-version=v1.0 MAEAKQELRKPVFTKVEQLRPGTTGHTLTVKVISTKMVKVGRSDGPQMRQNRRAECLVGDETGIIIFTARFDQVDLMKEGTTVILRNAKIDMYKGSMRLA VDKWGRIEEVSEPESIKVKEDNNLSLIEYEVITVVED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10013010 [exp]	0	1
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10000763 [exp]	4.0	0.8344
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	4.9	0.8136
AT3G58800			unknown protein		Lus10007354 [exp]	6.2	0.8251
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	6.5	0.7961
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	8.8	0.8143
AT5G14680			Adenine nucleotide alpha hydro...		Lus10032142 [exp]	10.7	0.7822
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10017043 [exp]	11.0	0.7820
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	13.0	0.8086
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10023571 [exp]	14.0	0.7966
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	14.7	0.7896

Compare expression of checked genes

Lus10013010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.