Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70420 128 / 2e-35 Protein of unknown function (DUF1645) (.1) AT1G23710 102 / 1e-25 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029153 [exp] 381 / 1e-134 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10030612 [exp] 168 / 5e-51 AT1G70420 155 / 8e-46 Protein of unknown function (DUF1645) (.1) Lus10030876 [exp] 166 / 5e-50 AT1G70420 147 / 5e-43 Protein of unknown function (DUF1645) (.1) Lus10002380 [exp] 42 / 0.0002 AT1G70420 78 / 1e-16 Protein of unknown function (DUF1645) (.1) Lus10042116 [exp] 40 / 0.0004 AT1G70420 61 / 2e-11 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041300 [exp] 96 / 2e-23 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1) Potri.012G081000 [exp] 86 / 2e-19 AT1G23710 104 / 5e-26 Protein of unknown function (DUF1645) (.1) Potri.015G076400 [exp] 77 / 5e-16 AT1G23710 91 / 6e-21 Protein of unknown function (DUF1645) (.1) Potri.009G102101 [exp] 68 / 6e-13 AT1G23710 74 / 4e-15 Protein of unknown function (DUF1645) (.1) Potri.008G156901 [exp] 61 / 4e-11 AT1G23710 57 / 1e-09 Protein of unknown function (DUF1645) (.1) Potri.018G096600 [exp] 59 / 2e-10 AT1G23710 76 / 2e-16 Protein of unknown function (DUF1645) (.1) Potri.018G096400 [exp] 41 / 0.0001 AT1G23710 58 / 9e-11 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10013011 pacid=23149797 polypeptide=Lus10013011 locus=Lus10013011.g ID=Lus10013011.BGIv1.0 annot-version=v1.0 ATGGAGACGATGAGTTCAGTATTAGCTATCAACCCAATCTACTCACAGACCGACAGTCAATTCGTCCAGGATTTCTGGCGCAAGCTCAAGCTAATGGAAG AAGAGGATAAGGACGACCGTCAACCCGTTGCTCAGAAGGACATCGCTTTGCAGACCCACCAGAACGAAAAAGCAGAGCAAATCGGAGCAATTGTCGATGA GAAATCGGACTCCGAGCAGCAAGATGGTGAAGATTTCCAGGAAGAAGAAGCGGAAGAGGAGGAATTCAGTTTTTCCAGCGCTTTCGGCGAAGAACCGTTG ATTTCCGCCGAGGAAGCGTTCTTAAACGGCCAGATCCGTCCGGTTCTCCCGCTGTTTGACCGAGATCTGCTCCTCTCCGACGAGATTGACGCTAATCCGG AAGGGCCGTACTGCGAGTGGAGCGGGAAGCAACATTCTAACGCCTCTACGACGTCGGCGGTTGTGGTCGACGCTTCGCCGGATGTCTGCAAGAAGAGCAA CTCCACCGGGTTCTGTAAGCTCCGGCGGTTTCGGGAGCTCGTCCTACGGAGCAACAGCGACGGCAAGGACAAGTTCGCCTTCCTCAACGAAGCATCCGGT AGTGGTAAAGGGAAGAAGAAGACGGAAAAAGTCACTAAATCCTCCACGTCGGCGGCGAAGAAGAAGGAGAAGGAAACGGCGTCGTCGGCGTTCGAGAAGA TATACGCTCAGCGGAAGGAGGAAACGGGGAAGAGATTGTCGTATCTGCCGTACAAGCAAGTAGGGTTCTTCGCCAGCGTTAATGGATTGAGCAAGAACGT TCATCCTTACTGA
AA sequence Show only first row Show all	>Lus10013011 pacid=23149797 polypeptide=Lus10013011 locus=Lus10013011.g ID=Lus10013011.BGIv1.0 annot-version=v1.0 METMSSVLAINPIYSQTDSQFVQDFWRKLKLMEEEDKDDRQPVAQKDIALQTHQNEKAEQIGAIVDEKSDSEQQDGEDFQEEEAEEEEFSFSSAFGEEPL ISAEEAFLNGQIRPVLPLFDRDLLLSDEIDANPEGPYCEWSGKQHSNASTTSAVVVDASPDVCKKSNSTGFCKLRRFRELVLRSNSDGKDKFAFLNEASG SGKGKKKTEKVTKSSTSAAKKKEKETASSAFEKIYAQRKEETGKRLSYLPYKQVGFFASVNGLSKNVHPY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	1.4	0.9472
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	1.4	0.9442
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	2.2	0.9265
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010055 [exp]	4.0	0.9287
AT3G20310	AP2_ERF	ATERF7, ATERF-7	ethylene response factor 7 (.1...		Lus10043182 [exp]	4.2	0.9375
AT5G60750			CAAX amino terminal protease f...		Lus10032326 [exp]	4.9	0.8992
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10012796 [exp]	5.7	0.8873
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	6.5	0.8971
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	6.9	0.9240
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	7.3	0.9058

Compare expression of checked genes

Lus10013011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.