Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23550 218 / 2e-68 SRO2 similar to RCD one 2 (.1) AT5G62520 201 / 5e-62 SRO5 similar to RCD one 5 (.1.2) AT1G70440 190 / 9e-58 SRO3 similar to RCD one 3 (.1) AT3G47720 148 / 1e-41 SRO4 similar to RCD one 4 (.1) AT1G32230 145 / 1e-38 ATP8, CEO1, RCD1, AtRCD1 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) AT2G35510 109 / 5e-26 SRO1 similar to RCD one 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029152 [exp] 639 / 0 AT1G23550 219 / 4e-69 similar to RCD one 2 (.1) Lus10030878 [exp] 345 / 1e-117 AT1G23550 223 / 1e-70 similar to RCD one 2 (.1) Lus10030611 [exp] 344 / 3e-117 AT1G23550 219 / 7e-69 similar to RCD one 2 (.1) Lus10030991 [exp] 110 / 2e-26 AT1G32230 376 / 2e-123 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Lus10035390 [exp] 104 / 4e-24 AT2G35510 352 / 5e-114 similar to RCD one 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081100 [exp] 227 / 3e-71 AT5G62520 243 / 2e-78 similar to RCD one 5 (.1.2) Potri.006G231100 [exp] 221 / 1e-69 AT1G23550 207 / 2e-64 similar to RCD one 2 (.1) Potri.015G076500 [exp] 217 / 3e-67 AT5G62520 251 / 2e-81 similar to RCD one 5 (.1.2) Potri.018G055100 [exp] 210 / 4e-65 AT1G23550 208 / 5e-65 similar to RCD one 2 (.1) Potri.006G231600 [exp] 207 / 7e-64 AT1G23550 185 / 6e-56 similar to RCD one 2 (.1) Potri.006G231500 [exp] 204 / 4e-63 AT1G23550 219 / 2e-69 similar to RCD one 2 (.1) Potri.001G137200 [exp] 159 / 3e-43 AT1G32230 479 / 6e-163 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.002G112300 [exp] 155 / 7e-43 AT2G35510 185 / 4e-52 similar to RCD one 1 (.1) Potri.003G096700 [exp] 127 / 3e-32 AT1G32230 451 / 4e-152 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.005G149701 [exp] 79 / 7e-18 AT2G35510 81 / 4e-19 similar to RCD one 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain
Representative CDS sequence Show only first row Show all	>Lus10013012 pacid=23149852 polypeptide=Lus10013012 locus=Lus10013012.g ID=Lus10013012.BGIv1.0 annot-version=v1.0 ATGATTGGCAACGCTTACTTGATGAATGCGAATGCTGCTGCAGCAGGATTCTCCGCTGCTGTTCTTCTTCAGGGGCAGAGGATTCCAGGTCTAGTTCCTG CGCTTGAGCAGCAAGAAACCATTTCAATTGACGATCACGAAATTTTGAAGGCGGATTCGGATTCCGACGAGTCTCCCGCCGGAGATTCCAATCGCGGCGG AAGAAGCGGAGGCGGTGGCGGTGGTGGAGAGTTCGAGGCTTTCACTAGGAACGGATTCGCGCCGATCCAGGGGGACACCTCCCACTACGCGGCAATCAAG AAGTGCTTCACCGACGGATTAGGGCAACGCGCCGCCGCTTCCGGCGTGGCGGTCACGGCAATTCACAGGAACTCGATGTCTGGTCCGAACGCGAAAGCAA GGTTCATCTCGTTTCGGGCGAACGAGAAGGGGATTGCGGAGAAGTGCGGCGGCGGCCATGCGCAGGCTAGGTACGCATGGTACGGCGCGTCCAGGGATGA GATCCGGCAAATTCTGAGCTTCGGATTCAGTCGGTGCGCCGCTGGGCACGGCTTCGGCGTTCATCTCTCCGCCATCTCATTCCCCACCGACTGCTTTGAT TCAGCGACTGCTGACGAAGACGGGAACAAGCACTTGATACTGTGCCGTGTATTGCTTGGCAAAGTTGAACCGATCTCTGCTGGCTCAACCCAATCGGCGC CCAGTTCTCTTGAATACGATTCCGGAGTCGACGATTTGACCAACACGAGAAAATACATCGTTTGGAGTTGCTACATGAATTCACACATATTCCCTGCTTT CATCATCAGCTTCAAGGAACCTGCTACTACGAATGTGAATGGATTGAACAGAGGTCCACCAGTGAGCACAACCAGACCCAGATCTCCCTGGATGAGCTTC CCTGCTCTGTTAAGGTTCCTTTCAGGATTGTTGCATCCAACCATCATGACCATGGTTTCAAAGAGTTACGAGGACTTCCGGCATCACAAGATCACTAGGG AGCAAATGATTAGAGTAACAAGGCGGCTTGTTGGGGATGAACTGTTAACTTCAGTAGTCAGAACTCACCAGAAGGCACGTTTAGTTTCATGTTGA
AA sequence Show only first row Show all	>Lus10013012 pacid=23149852 polypeptide=Lus10013012 locus=Lus10013012.g ID=Lus10013012.BGIv1.0 annot-version=v1.0 MIGNAYLMNANAAAAGFSAAVLLQGQRIPGLVPALEQQETISIDDHEILKADSDSDESPAGDSNRGGRSGGGGGGGEFEAFTRNGFAPIQGDTSHYAAIK KCFTDGLGQRAAASGVAVTAIHRNSMSGPNAKARFISFRANEKGIAEKCGGGHAQARYAWYGASRDEIRQILSFGFSRCAAGHGFGVHLSAISFPTDCFD SATADEDGNKHLILCRVLLGKVEPISAGSTQSAPSSLEYDSGVDDLTNTRKYIVWSCYMNSHIFPAFIISFKEPATTNVNGLNRGPPVSTTRPRSPWMSF PALLRFLSGLLHPTIMTMVSKSYEDFRHHKITREQMIRVTRRLVGDELLTSVVRTHQKARLVSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	0	1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	1.0	0.9539
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	3.5	0.9472
					Lus10003556 [exp]	4.6	0.9401
AT1G10380			Putative membrane lipoprotein ...		Lus10037237 [exp]	5.1	0.9079
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	5.3	0.9244
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	5.9	0.9278
AT2G45010			PLAC8 family protein (.1.2)		Lus10028184 [exp]	6.2	0.8980
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	6.6	0.9317
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	7.3	0.9249
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10013950 [exp]	8.5	0.9013

Compare expression of checked genes

Lus10013012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.