Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23540 573 / 0 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 567 / 0 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 509 / 1e-170 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT5G38560 475 / 4e-158 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G68690 474 / 2e-157 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G70450 460 / 3e-156 Protein kinase superfamily protein (.1) AT1G26150 464 / 7e-153 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24550 445 / 1e-146 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G34440 416 / 2e-135 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT1G52290 411 / 2e-135 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029151 [exp] 880 / 0 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 879 / 0 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10030879 [exp] 671 / 0 AT1G70460 542 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10030610 [exp] 508 / 3e-170 AT1G23540 354 / 9e-112 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10034082 [exp] 466 / 8e-154 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 465 / 2e-153 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10011098 [exp] 449 / 3e-148 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 443 / 2e-145 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 439 / 1e-144 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189700 [exp] 597 / 0 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 470 / 2e-155 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 469 / 4e-155 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 457 / 2e-150 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 449 / 8e-147 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.018G081300 [exp] 438 / 8e-144 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 420 / 6e-138 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 419 / 5e-137 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 408 / 2e-133 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 403 / 2e-130 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10013013 pacid=23149869 polypeptide=Lus10013013 locus=Lus10013013.g ID=Lus10013013.BGIv1.0 annot-version=v1.0 ATGTCAAACTCGGCGGCGACGTCGGGTTTCAATCGGAGATTCTCGGTGGTTTTCAAAGCGGATAATTCCTCCACAGGCAGTTCGGATTCTGGTTCCGCTT CTCCTCCTCAGCCGGATGACGGCGGGGGCTCCACTACTCCGGCGCCGTCAGGCGACGGCGGAGGATCGAAGTCCGGTCCCGGCGCCTCTCCTCCCAGTAA CAACGACGGTGGAAACAACGTCAAGACGGATAGCGACGATGGTAGTGATTCCGCTAATTCTTCACCGTCACCGCCGCCGCCGTCGGATTCCGGGGAGCAG AAGTCCGAATCGGCGGAATCTCCGGCTGATTCAGGATCACAACAGGCATCGCCGCCGCCTCCTCCTCCGTCGTCGTCTTCTAAATCGCCACCGCCGAAAG CGAAATCACCGCCGCCTGAGCAAAAATCTGCGTCTAATACTAATACCCCGTCTCCTCCTCCTCCGTCCGACGCAGAACAACAGTCTCCTCAATGGTATGA GGCGTCTCTTCAATCAGTCCGTCAATCATCACCACCTCCGCCGTCTGAAGAAGAAGAAGAAGAAAAGAAGCCCGATCAATCCCCTTCCTCCGACAACAAC GGCGGTTCTCCTCCTTCTCCAAAGCTACAACAACAATCCTCCACTCCAGCCCCGCCGGGGAATCCGCCAGCACCACCAACTTCAGCTACGTTTAACCCTC CCCCGGCAATTGAGTCGCCTCCAGGTCAGCCCGCGTCAGAAACCATTGCTCGGGGAAACCCCGTCGGTCGTTCATCTTCGTTACAGTCAACCTCACCGTC AACATCATCATCATCATCGCAAGATTCTCCTAATTCAGCCTGGTATTCAGACTCGTCGGGGAATTCCAAAATCTCAAATAGTGGAAATGGAAATGGAAAT TCAAATTCGAATTCTGGAACCACGGCTGTAATTGTGGGTAGCGCGGTGGTGGTGAGCGTGATACTCATCGCGTTAATTGCAATCGTCATTGTAACGAGGA AGAAGAAGAATAAGCCCTACGGCCATCCCTATGGCGCCGCTCCTCCTTACATGACTCCCCCCAGCAATTTCTCTCCTTTGCAGCAGTCAGACCCATACTA CTACGGACAAACTCCAAATCCAAATGCATTCTCTAGCCACAACGACTCGTATGTATCACAACAACATTCAGGGGCATTTGGAACGGCATACGGAGGACCT GATTCGGGACTAATAAGCAGTGGGAAGTCCTTCTTCAGTTACGATAAAGTGATGGAGATGACGAGGGGATTTGCTAAGGAGAACGTAATAGGGGAAGGGG GATTCGGATACGTGTTCAAAGGGTGGCAGCCGGACGGGAAGTTGGTGGCCGTGAAGCAACTCAAGGCAGGGAGTGGACAGGGAGACAGGGAATTTAAAGC CGAGGTTGAGATCATTAGCCGTGTTCATCATCGGCACCTTGTTTCTTTGGTTGGTTATAGCATGTCTGATCAGCAGAAGCTTCTCATTTATGAGTTCCTC CCCAATAACACTCTTGAGCATCACTTGCACGCGGAAGGGTCAGGGTTAACTTGGCAGCAAAGGCTCAAAATTGCTATAGGTTCAGCCAAGGGATTGGCTT ACTTGCATGAAGATTGTAACCCAAAAATCATTCATCGAGATATTAAGTCGGCCAACATTTTGCTGACTGATGATTTCGAAGCACAGGTTGCCGACTTTGG TCTTGCAAGGCTGAACGATACTACTCAGACTCACGTGTCAACTCGCGTCATGGGAACATTTGGGTACCTAGCACCAGAGTATGCACAAAGTGGGAAGCTA ACGGATAGATCGGACGTGTATTCATTTGGGGTTGTCCTTCTTGAGCTTATAACTGGAAGGAAGCCTGTTGATTCGACTCGTCCCCTTGGGGATGAAAGCC TAGTTGAATGGGCTCGTCCACACCTAATGCACGCCATGGAGACAGGAGACCTTGGCGAGCTAGTAGATCCACGGCTGGGGAAGCGATACGTAGAGACAGA TATGATGAGGATGATCGAGACGGCTGCTGCCTGCATCCGCCACTCTGCTCCCAAGAGACCAAGAATGGTGCAGGTGGTGAGAGCGTTGGACAGCGAACAA TCGGGGGACCTGACGAACGGGATGAAGTACGGGCAGAGCACAATGTACGACTCGGGTCAGTACAACGAAGAGATCCTGAAGTTCAGGAGGATGGCATTGG GTTCCGACGACGGCAATGGAGATTTTGGTTACAGTGGTGGGTTCTCCACTAGAGATACGATGTTGTCTCACGGTCAACAAACTCCGACGGGCGAATTCAG CAGCGGAGAAATTGAAACTCGAGCCATTAACACACCTTCCTCCAGAAACTATTAA
AA sequence Show only first row Show all	>Lus10013013 pacid=23149869 polypeptide=Lus10013013 locus=Lus10013013.g ID=Lus10013013.BGIv1.0 annot-version=v1.0 MSNSAATSGFNRRFSVVFKADNSSTGSSDSGSASPPQPDDGGGSTTPAPSGDGGGSKSGPGASPPSNNDGGNNVKTDSDDGSDSANSSPSPPPPSDSGEQ KSESAESPADSGSQQASPPPPPPSSSSKSPPPKAKSPPPEQKSASNTNTPSPPPPSDAEQQSPQWYEASLQSVRQSSPPPPSEEEEEEKKPDQSPSSDNN GGSPPSPKLQQQSSTPAPPGNPPAPPTSATFNPPPAIESPPGQPASETIARGNPVGRSSSLQSTSPSTSSSSSQDSPNSAWYSDSSGNSKISNSGNGNGN SNSNSGTTAVIVGSAVVVSVILIALIAIVIVTRKKKNKPYGHPYGAAPPYMTPPSNFSPLQQSDPYYYGQTPNPNAFSSHNDSYVSQQHSGAFGTAYGGP DSGLISSGKSFFSYDKVMEMTRGFAKENVIGEGGFGYVFKGWQPDGKLVAVKQLKAGSGQGDREFKAEVEIISRVHHRHLVSLVGYSMSDQQKLLIYEFL PNNTLEHHLHAEGSGLTWQQRLKIAIGSAKGLAYLHEDCNPKIIHRDIKSANILLTDDFEAQVADFGLARLNDTTQTHVSTRVMGTFGYLAPEYAQSGKL TDRSDVYSFGVVLLELITGRKPVDSTRPLGDESLVEWARPHLMHAMETGDLGELVDPRLGKRYVETDMMRMIETAAACIRHSAPKRPRMVQVVRALDSEQ SGDLTNGMKYGQSTMYDSGQYNEEILKFRRMALGSDDGNGDFGYSGGFSTRDTMLSHGQQTPTGEFSSGEIETRAINTPSSRNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10013013 [exp]	0	1
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10035114 [exp]	4.1	0.7460
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013367 [exp]	12.5	0.7145
AT5G39020			Malectin/receptor-like protein...		Lus10008333 [exp]	14.9	0.6980
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	18.4	0.6964
					Lus10001825 [exp]	20.0	0.6957
AT3G60630	GRAS	ATHAM2, LOM2	LOST MERISTEMS 2, ARABIDOPSIS ...		Lus10002205 [exp]	22.2	0.6841
					Lus10003825 [exp]	23.1	0.6912
					Lus10038051 [exp]	25.0	0.6912
AT5G56990			unknown protein		Lus10029528 [exp]	26.7	0.6912
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10015044 [exp]	27.9	0.6623

Compare expression of checked genes

Lus10013013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.