Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23540 562 / 0 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 552 / 0 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 497 / 4e-171 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70450 460 / 2e-161 Protein kinase superfamily protein (.1) AT5G38560 465 / 5e-159 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G68690 463 / 5e-158 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 459 / 5e-156 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24550 444 / 2e-151 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 412 / 1e-140 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT4G34440 416 / 2e-140 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029151 [exp] 852 / 0 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013013 [exp] 843 / 0 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10030879 [exp] 649 / 0 AT1G70460 542 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10034082 [exp] 458 / 1e-155 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 457 / 3e-155 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10011098 [exp] 445 / 1e-151 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 436 / 2e-147 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 432 / 6e-147 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10014318 [exp] 411 / 2e-142 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189700 [exp] 578 / 0 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 465 / 2e-158 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 461 / 4e-157 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 450 / 7e-153 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 449 / 5e-152 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.018G081300 [exp] 434 / 6e-147 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 420 / 9e-143 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 418 / 3e-141 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 405 / 4e-137 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 402 / 8e-135 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10013014 pacid=23149835 polypeptide=Lus10013014 locus=Lus10013014.g ID=Lus10013014.BGIv1.0 annot-version=v1.0 ATGACTCCCCCTAGCAACTTCTCTCCTTTGCAGCAGTCAGCAGACCCATACTACTACGGACAAACTCCAAATTCAAATGCATTCTCTAGCCAGAACGACT CCTACGTATCACAGCAACATTCTGGGGCATTTGGAACGGCATCTGGAGGACCGGATTCGGGACTAATAACCAGCGGGAAGTCATTCTTCAGTTACGATGA AGTGATGGAGATGACGAGGGGATTTGCTAGGAAGAACATAATAGGGGAAGGGGGATTCGGATACGTGTTCAAAGGGTGGCAGCCGGACGGGAAGTTGGTG GCGGTGAAGCAACTCAAGGCAGGGAGTGGACAGGGAGACAGGGAATTTAAAGCCGAGGTTGAGATTATTAGCCGTGTTCATCATCGGCACCTTGTTTCTT TGGTTGGTTACTCCATGTCTGATCAGCAGAAGCTGCTCATTTATGAGTTTCTTCCTAACAACACTCTTGAGCATCACTTGCACGCGGAAGGGTCAGGGTT GACTTGGCAACAAAGGCTCAAAATTGCTATTGGTTCAGCCAAGGGATTGGCTTACTTGCATGAAGATTGTAACCCAAAAATCATTCATCGAGATATTAAG TCGGCCAACATTTTGCTGACTGATGATTTCGAAGCACAGGTTGCCGACTTTGGTCTTGCAAGGCTGAACGATACTACTCAGACTCACGTGTCAACTCGCG TCATGGGAACATTTGGGTACCTAGCACCAGAGTATGCACAAAGTGGGAAGCTAACGGATAGATCGGACGTGTATTCATTTGGGGTTGTCCTTCTTGAGCT TATAACTGGAAGGAAGCCTGTTGATTCGACTCGTCCCCTTGGGGATGAAAGCCTAGTTGAATGGGCTCGTCCACACCTAATGCACGCCATGGAGACAGGA GACCTTGGCGAGCTAGTAGATCCACGGCTGGGGAAGCGATACGTAGAGACAGATATGATGAGGATGATCGAGACGGCTGCTGCCTGCATCCGCCACTCTG CTCCCAAGAGACCAAGAATGGTGCAGGTGGTGAGAGCGTTGGACAGCGAACAATCGGGGGACCTGACGAACGGGATGAAGTACGGGCAGAGCACAATGTA CGACTCGGATCAGTACAACGAAGAGATCATGAAGTTCAGGAGGATGGCATTGGGTTCCGGCGACGGCAATGGAGATTTTGGTTACAGTGGTGGGTTCTCC ACTACAGATACGATGTTGTCTCACGGTCAACAAACTCCGACTGGCGAATTCAGCAGCGGAGAAATTGAAACTCGAGCCATTAACACACCTTCCTCCAGAA ACTATTAA
AA sequence Show only first row Show all	>Lus10013014 pacid=23149835 polypeptide=Lus10013014 locus=Lus10013014.g ID=Lus10013014.BGIv1.0 annot-version=v1.0 MTPPSNFSPLQQSADPYYYGQTPNSNAFSSQNDSYVSQQHSGAFGTASGGPDSGLITSGKSFFSYDEVMEMTRGFARKNIIGEGGFGYVFKGWQPDGKLV AVKQLKAGSGQGDREFKAEVEIISRVHHRHLVSLVGYSMSDQQKLLIYEFLPNNTLEHHLHAEGSGLTWQQRLKIAIGSAKGLAYLHEDCNPKIIHRDIK SANILLTDDFEAQVADFGLARLNDTTQTHVSTRVMGTFGYLAPEYAQSGKLTDRSDVYSFGVVLLELITGRKPVDSTRPLGDESLVEWARPHLMHAMETG DLGELVDPRLGKRYVETDMMRMIETAAACIRHSAPKRPRMVQVVRALDSEQSGDLTNGMKYGQSTMYDSDQYNEEIMKFRRMALGSGDGNGDFGYSGGFS TTDTMLSHGQQTPTGEFSSGEIETRAINTPSSRNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10013014 [exp]	0	1
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	1.0	0.7965
					Lus10011218 [exp]	6.0	0.7898
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	7.3	0.7818
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	8.5	0.7810
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	9.7	0.7791
					Lus10022893 [exp]	9.8	0.7748
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033173 [exp]	10.5	0.7015
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	10.7	0.7791
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10027300 [exp]	11.0	0.7323
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	11.5	0.7791

Compare expression of checked genes

Lus10013014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.