Plant FIBer expression Database

Lus10013015 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23530 43 / 5e-05 unknown protein
AT1G74055 39 / 0.0009 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029150
[exp]
129 / 6e-38 ND /
Lus10030608
[exp]
62 / 1e-11 AT1G23530 70 / 7e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G041600
[exp]
64 / 5e-13 AT1G23530 41 / 9e-05 unknown protein
Potri.009G106300
[exp]
40 / 0.0002 AT2G26520 77 / 4e-19 unknown protein
PFAM info
Representative CDS sequence
>Lus10013015 pacid=23149836 polypeptide=Lus10013015 locus=Lus10013015.g ID=Lus10013015.BGIv1.0 annot-version=v1.0
ATGGCTACCCTTCCACAGGCAGATCAGCAGCAACCACAACAGCAGGGTATCGGGTTCGCAGTCCCGGTTCCAGGCGGGAACCAGCTGGTTGAACCGGTCC
AGCACTCGAACGGGTCGTTCGGGTCGGTGTTCATCGTCCTGGCGGTGATCGTCTTGGTCTCGACCGTGGCGTGCTGCCTGGGACGTTTCTGCAGCAAGAG
AAAGCATCAAGGGAGTGGGAAACCGAAGAAGAACAAGAAGGATAAGAAAGGTGGCAAAAACCAGAAGCCGCAGATGCAGAGTAACTCGAAAGTGATGCAG
AGTGATGACGACGACATAGAGTTTGGGTTTGGGAAAGGTGGTAGCGGGCTGGGTCGGCCCATGTCTGGGATGAGGGAAGGGCCTAATGGGCCTCATCATA
AGATGATGGGTCCTCCTCCTCCTGGGTTTTTTCCTCCTCATGGGCCTCCTCAGATGCAGAAGCCCAGCCAGCATCAGCATCAGCAGCAGAAAAAGGGGTA
TAATGGTAATAGTCATCATAGTGGTCGATTCAAAGGTGGTGATGGGAATGGGAATTATCCCACCATGGAGTTTCATGATGGAGAGCCCTTTAGGCATTGA
AA sequence
>Lus10013015 pacid=23149836 polypeptide=Lus10013015 locus=Lus10013015.g ID=Lus10013015.BGIv1.0 annot-version=v1.0
MATLPQADQQQPQQQGIGFAVPVPGGNQLVEPVQHSNGSFGSVFIVLAVIVLVSTVACCLGRFCSKRKHQGSGKPKKNKKDKKGGKNQKPQMQSNSKVMQ
SDDDDIEFGFGKGGSGLGRPMSGMREGPNGPHHKMMGPPPPGFFPPHGPPQMQKPSQHQHQQQKKGYNGNSHHSGRFKGGDGNGNYPTMEFHDGEPFRH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23530 unknown protein Lus10013015
[exp]
0 1
AT3G20650 mRNA capping enzyme family pro... Lus10003803
[exp]
4.1 0.9246
AT5G02140 Pathogenesis-related thaumatin... Lus10003962
[exp]
4.5 0.9116
AT4G25140 OLE1, OLEO1 oleosin 1 (.1) Lus10022141
[exp]
4.9 0.9157
AT3G26350 unknown protein Lus10006464
[exp]
5.2 0.9202
AT5G22870 Late embryogenesis abundant (L... Lus10021404
[exp]
5.7 0.9207
AT5G22870 Late embryogenesis abundant (L... Lus10016161
[exp]
10.2 0.9196
AT5G19875 unknown protein Lus10034527
[exp]
11.5 0.8985
AT5G18970 AWPM-19-like family protein (.... Lus10001116
[exp]
15.0 0.9170
AT1G14730 Cytochrome b561/ferric reducta... Lus10031935
[exp]
15.2 0.9142
Lus10020401
[exp]
16.2 0.9087

Lus10013015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.