Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55180 272 / 5e-88 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 267 / 4e-86 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 256 / 2e-81 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 256 / 2e-81 O-Glycosyl hydrolases family 17 protein (.1) AT3G57270 234 / 8e-75 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT4G29360 238 / 2e-74 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G30080 231 / 2e-72 Glycosyl hydrolase superfamily protein (.1) AT2G26600 230 / 2e-72 Glycosyl hydrolase superfamily protein (.1.2) AT4G16260 227 / 8e-72 Glycosyl hydrolase superfamily protein (.1) AT4G18340 228 / 1e-71 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029149 [exp] 684 / 0 AT5G55180 271 / 2e-87 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 260 / 4e-83 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 258 / 2e-82 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 255 / 2e-81 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 248 / 3e-78 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002807 [exp] 238 / 3e-76 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10011482 [exp] 237 / 7e-75 AT3G15800 540 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10004391 [exp] 231 / 3e-72 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10027860 [exp] 227 / 8e-72 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G135900 [exp] 268 / 1e-89 AT5G55180 142 / 7e-40 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G094400 [exp] 263 / 4e-84 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G158400 [exp] 262 / 4e-84 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 258 / 3e-82 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 237 / 4e-74 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G084900 [exp] 233 / 1e-73 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.016G057400 [exp] 230 / 4e-73 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.004G132700 [exp] 232 / 5e-73 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 229 / 9e-72 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 224 / 4e-71 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10013016 pacid=23149798 polypeptide=Lus10013016 locus=Lus10013016.g ID=Lus10013016.BGIv1.0 annot-version=v1.0 ATGAAAATGTTCATCCATGTCTTCCCCTGCATTCTTTCTTTAATCTCCATCGCTTTGATCCATTTCCCATCTCATACAGATGCTGCACCAGTGGGAGTGT GCTACGGCAGAGTAGCCAACAACCTGCCACTTCCAGCTACGGTGGTGGGACTCTTGCAAGCCAGCGGAATAAGAAACATCCGGCTCTTCGACACCGACGC CGCAACACTCCGATCATTCGCCGGCACCGGAATCAGTCTCATGATCGGCGTCCCAAACGAAAGCCTCCCATCGATCGCATCCGGAATGGCGAATTCTACC ATCGATTGGCTAATCACAAACGTCTTCGCTCACATTCCTCCACCGCAGGTGAAATACCTCGCCGTCGGAAACGAAGCTTTCGTTAGGGATTCGTTCTACA CGCCTTATGTTGTTCCCGCGGTAATCAACCTCCACGGAGCTCTCCAAACCCTAGATCTGGCGAATCGGATCAAGATCTCTTCTCCACAGCCGATCTCGGT GCTATCCAGCTACTACCCTCCTTCCTCGGGCAGCTTCGATCCGATCATCAAGCCGGCGATGATCCCGCTCCTCCAGTTCCTCCGCGACTCCAGATCTCCG CTCATGCTGAATCTGTATCCGTACGAGGCCTACGTGGCGCATACGAACCGGATCCCGCTCGACTACGTGCTGTTCAAGACCGACGGCGAGTTTGGCGACG CAGGGATGATGTACAACAACTTACTCGACGCGAATATTGACGCGTTCGTCCACGCGATGGACAGGGAGGGTTTCCAGGGGATTAAGGTCGTGGTGGCGGA GACGGGGTGGCCGACGGCGTGTGGAGAGGCGGCGAGTGTAGACAACGCGCTGACGTATAATGATAATGTTGTGCGGCGGACGGCGAACGACGTCGGAACG CCGAAGCGTCCGAAGGAGGGAGTGGAGGTTTACCTGTTTGATCTGTTTGATGAGAACGAAAGAGGCGGGAATGAGTATGAGAAGCATTACGGGATCTTCA CCCCTGCTGGGGTTAAGCTTTACGATCTTAGATTTAGCAATAATTAG
AA sequence Show only first row Show all	>Lus10013016 pacid=23149798 polypeptide=Lus10013016 locus=Lus10013016.g ID=Lus10013016.BGIv1.0 annot-version=v1.0 MKMFIHVFPCILSLISIALIHFPSHTDAAPVGVCYGRVANNLPLPATVVGLLQASGIRNIRLFDTDAATLRSFAGTGISLMIGVPNESLPSIASGMANST IDWLITNVFAHIPPPQVKYLAVGNEAFVRDSFYTPYVVPAVINLHGALQTLDLANRIKISSPQPISVLSSYYPPSSGSFDPIIKPAMIPLLQFLRDSRSP LMLNLYPYEAYVAHTNRIPLDYVLFKTDGEFGDAGMMYNNLLDANIDAFVHAMDREGFQGIKVVVAETGWPTACGEAASVDNALTYNDNVVRRTANDVGT PKRPKEGVEVYLFDLFDENERGGNEYEKHYGIFTPAGVKLYDLRFSNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10013016 [exp]	0	1
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10020037 [exp]	3.5	0.8531
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	3.6	0.8988
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	8.6	0.8023
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	13.6	0.8671
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	17.1	0.7817
AT5G46060			Protein of unknown function, D...		Lus10000133 [exp]	19.9	0.8053
AT5G07130		LAC13	laccase 13 (.1)		Lus10042251 [exp]	21.4	0.8428
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10029235 [exp]	23.0	0.8174
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10021740 [exp]	25.5	0.7580
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10005710 [exp]	27.0	0.8092

Compare expression of checked genes

Lus10013016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.