Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60420 612 / 0 DC1 domain-containing protein (.1) AT4G31240 286 / 3e-91 protein kinase C-like zinc finger protein (.1.2) AT2G44380 45 / 8e-05 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G17740 44 / 0.0001 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G27660 44 / 0.0002 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017252 [exp] 297 / 5e-95 AT1G60420 311 / 1e-100 DC1 domain-containing protein (.1) Lus10005618 [exp] 274 / 2e-86 AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1) Lus10029148 [exp] 218 / 2e-68 AT1G60420 121 / 5e-33 DC1 domain-containing protein (.1) Lus10000548 [exp] 47 / 3e-05 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 47 / 4e-05 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G060200 [exp] 670 / 0 AT1G60420 679 / 0.0 DC1 domain-containing protein (.1) Potri.010G059550 [exp] 664 / 0 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G059401 [exp] 663 / 0 AT1G60420 667 / 0.0 DC1 domain-containing protein (.1) Potri.010G059700 [exp] 662 / 0 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.010G059600 [exp] 657 / 0 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 654 / 0 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.010G060100 [exp] 651 / 0 AT1G60420 654 / 0.0 DC1 domain-containing protein (.1) Potri.010G060300 [exp] 562 / 0 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1) Potri.010G059800 [exp] 409 / 9e-140 AT1G60420 390 / 1e-132 DC1 domain-containing protein (.1) Potri.008G175600 [exp] 358 / 1e-119 AT1G60420 338 / 5e-112 DC1 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Lus10013017 pacid=23149856 polypeptide=Lus10013017 locus=Lus10013017.g ID=Lus10013017.BGIv1.0 annot-version=v1.0 ATGGACCTAACAGCCCTCCTTTCTGGACAAGACAGAGACTTTCTCAACCGCAGCAATGGCGAACAGGTTAAAGTCAGCAGTTTGATCACTGGGAAGAAGA AGACTTTGGGATTGTACTTCTCTGCCTCATGGTGTGGAGCTTGTCAGAAGTTTACTCCAACGTTACTGGAAACCTATGAACAGGTATTGGGTTCATCGAC AAAAGGCGATTTCGAAGTTGTTTTCATTTCCTCTGACAAAGATGAGGAGTCCTTTACCGAGTACTTCTCCAAGATGCCGTGGCTTGCTATTCCTTTTTCC GATTCGGATGTTCGTGCGAGTCTGAAGGAGATGTTCAAAGCTGAGAGTATTCCTCATCTTGTGATTCTCGACGCGGAAAAAGGGAAAGTTTCTTGTCGCG GTGGAGTCAGAATCGTCAGGAAGTATGGCGCTGAAGGTTATCCATTTACTGAGGAGAGGCTCCGGTTGTTGATGGAGGAAGAGGAGGATGCTAAGAGGAA TCAGACTCTGAGGTCGTTGCTGGCTTCTCCGTCTCGAGATTACCTGATCTCTAACGACGGAACGAAGACTGATATACTTGAGCTAGAAGGGAAAATGGTT TGCTTGTACATTGCACTAGTTGCTAATGCATCATGCGCCGAGTTCACACCTAAACTAGTGGATTTCTACAACGAAATCAAGGGAAATGGAGAGGGTTCCG ATTTCGAGGTGGTTCTTCTGTCGTTCGACTCAGATAAGGAGAAGTTTCGGAAAGGTTTCGAGACAATGCCGTGGCTGGCAGTGCCGTTCCAGGACAAAAC CTGTTCCAAGCTAGTGGACTACTTTCAGCTCAGAAGCATCCCCACAGTGATCGTGATTGGCCGAGACGGCAAGACACTGAACCCGAATGTTGCTGAACTC ATTGAGGAACTTGGGACTGAAGCTTACCCTTTTAGTCCAGAGAAGCTAGCTCGGTTTGAAGAGATCAAGAAAGCGGAACTCGAATCGCAGACGCTGGAAT CGATTCTGGTTCACGGGGACCAGGATTTCGTCGTCGATAAGAGCGGTGCAACGGTTCCAGTTTCTGAACTAGTTGGGAAGACAATCCTCCTATACTTCTC AGCACACTGGTGCCCACCATGCCGCAAATTCACCCCGAAGCTCATCTCATCATACCACGAACTCAAATCAAAAGACGACAACAACTTCGAGATAATCTTC ATCTCCAGCGACCACGACCAGCCATCCTTCGACGAGTATTTCTCAACGATGCCCTGGCTAGCCGTTCCATTCGACCCCGATACCAAAACATCAATAATGC GGAAGAAGTTCAAGATATCAGGCATTCCGGCTGTGGTAGCAATCGGGCCGGATGGCAAGACACTGACTAAGGAAGGCCGAGGCGCCTTCACTGTTCACGG GGCGGATGCTTATCCTTTCACCGAGGAACATCTAAAGACGTTGGACGAGAAAGCGGACGAAAAGGCGAAGCAGTGGCCGGAGAAGTTGAGGGATGAGGGG TTACACGAGCATGAGGTTGTGAGGAAGAAAGGGAGGGCTTATATGTGTGATGGGTGTAAGGAAGTTGGGGGTGGTTGGGCTTATAGTTGTGAGGTTTGTG GGTTTGATGTTCATCTTGAATGTGGTCTTAAGGAAGAGGAAATTGTTTGTGTTGGGAAGGAAGAAGGATGGATTTGTGAAGGAGATGTGTGTAGGAAAGC TTGA
AA sequence Show only first row Show all	>Lus10013017 pacid=23149856 polypeptide=Lus10013017 locus=Lus10013017.g ID=Lus10013017.BGIv1.0 annot-version=v1.0 MDLTALLSGQDRDFLNRSNGEQVKVSSLITGKKKTLGLYFSASWCGACQKFTPTLLETYEQVLGSSTKGDFEVVFISSDKDEESFTEYFSKMPWLAIPFS DSDVRASLKEMFKAESIPHLVILDAEKGKVSCRGGVRIVRKYGAEGYPFTEERLRLLMEEEEDAKRNQTLRSLLASPSRDYLISNDGTKTDILELEGKMV CLYIALVANASCAEFTPKLVDFYNEIKGNGEGSDFEVVLLSFDSDKEKFRKGFETMPWLAVPFQDKTCSKLVDYFQLRSIPTVIVIGRDGKTLNPNVAEL IEELGTEAYPFSPEKLARFEEIKKAELESQTLESILVHGDQDFVVDKSGATVPVSELVGKTILLYFSAHWCPPCRKFTPKLISSYHELKSKDDNNFEIIF ISSDHDQPSFDEYFSTMPWLAVPFDPDTKTSIMRKKFKISGIPAVVAIGPDGKTLTKEGRGAFTVHGADAYPFTEEHLKTLDEKADEKAKQWPEKLRDEG LHEHEVVRKKGRAYMCDGCKEVGGGWAYSCEVCGFDVHLECGLKEEEIVCVGKEEGWICEGDVCRKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	4.5	0.9341
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	4.8	0.9486
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	6.5	0.9472
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10014066 [exp]	7.7	0.9354
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	9.2	0.9190
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	9.5	0.9312
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	10.6	0.9228
AT1G52155			unknown protein		Lus10038269 [exp]	12.5	0.9236
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	13.1	0.9282
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	13.6	0.9408

Compare expression of checked genes

Lus10013017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.