Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70480 342 / 1e-117 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2) AT1G23560 264 / 8e-87 Domain of unknown function (DUF220) (.1) AT1G23600 159 / 9e-47 Domain of unknown function DUF220 (.1.2) AT1G23690 153 / 2e-44 Domain of unknown function DUF220 (.1.2.3) AT1G23520 152 / 5e-44 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2) AT1G23640 152 / 2e-42 unknown protein AT1G23660 145 / 3e-41 Domain of unknown function DUF220 (.1) AT1G23670 144 / 3e-41 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2) AT1G23580 144 / 6e-41 Domain of unknown function DUF220 (.1) AT1G23590 142 / 7e-41 Domain of unknown function DUF220 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029147 [exp] 557 / 0 AT1G70480 367 / 2e-127 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041700 [exp] 396 / 2e-138 AT1G70480 385 / 5e-134 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02713 [flax] [poplar] DUF220 Domain of unknown function DUF220
Representative CDS sequence Show only first row Show all	>Lus10013018 pacid=23149843 polypeptide=Lus10013018 locus=Lus10013018.g ID=Lus10013018.BGIv1.0 annot-version=v1.0 ATGTGGGAGACAGAAGTGGAGGAGAGAACTTCTAGTGTGAGCATTCCGAAGGGGAATCCGACAGTGAAGAGGAAGGGGTTTGATCCATCGTTTCTAGTGC AGCTACCCAGCAAGCTTCAGAATTCCTTCAAGTCGCAGCTGAGGAAATTCAGCAGAGGTAACAAGGGGGGAAGTTCTACTGGGTCATCTGATGTTGCCAT TGGGATTGATTTGGAGAAGCAGTTGCAGGCTTGGAGAGGGAATCCTTCATGGGTTGATCAATCTCCAAAGATAGAGGTGAGTGTGCCGAAGGGGTCTCTT TGCAACCTCAGCGTGAAGGTCAATGTTGGTTTGCCACCAGATGCTGTGTACAACATTGTAACTGACCCTAATAACAGGAGGGTTTTCAAGAACATCAAGG AAGTGATATCCAGGAAAGTTCTGTTTGATGATGGCCGGAGGCAACTGGTGGAAGTTGAACAAGCAGCTATATGGACATTCCTTTGGTGGTCAGGGACCAT GTCTGTTCATGTTTTGGTCGATCAAAACCGCAACAGTCTTTCCATGAAGTTTAAGCAGTTGAAAACCGGGTTTATGGACCGATTCGAAGGATCATGGAAA GTGGAGCCTCTTTTTGTCGACGAGCAGACCTGCCATCCGTTGAAGCCTAAAACATGGGGAGATTACGAGTCGTGTACTGGAGGTCGAGGAAGGATAGGAT CAGTAGTAAGCTTGGAACAGTTGATCCAGCCATCGATAGTTCCACCGCCACCGATTTCTTGGTACCTGAGAGGTATCACTTCCAGAACCACAGAAATGAT TGTGAATGATCTCCTTGCTGAATCTGCCAGAATGAGAGAAGGGCTCAGCGGGCCGAAGAAGCTGGAAGAAGAATCTGAATCTTCGTCCGCAAGTCTGTTG GATCAAGAACGAGATTTGGAGCCGTCCAATATTAAAGAACGGTGGATCATGCGCAGGAAGAACGCGAAAAATCAACGCAGAAGAGATTCAGGACGCTGA
AA sequence Show only first row Show all	>Lus10013018 pacid=23149843 polypeptide=Lus10013018 locus=Lus10013018.g ID=Lus10013018.BGIv1.0 annot-version=v1.0 MWETEVEERTSSVSIPKGNPTVKRKGFDPSFLVQLPSKLQNSFKSQLRKFSRGNKGGSSTGSSDVAIGIDLEKQLQAWRGNPSWVDQSPKIEVSVPKGSL CNLSVKVNVGLPPDAVYNIVTDPNNRRVFKNIKEVISRKVLFDDGRRQLVEVEQAAIWTFLWWSGTMSVHVLVDQNRNSLSMKFKQLKTGFMDRFEGSWK VEPLFVDEQTCHPLKPKTWGDYESCTGGRGRIGSVVSLEQLIQPSIVPPPPISWYLRGITSRTTEMIVNDLLAESARMREGLSGPKKLEEESESSSASLL DQERDLEPSNIKERWIMRRKNAKNQRRRDSGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70480			Domain of unknown function (DU...		Lus10013018 [exp]	0	1
					Lus10012564 [exp]	1.7	0.8373
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10016096 [exp]	4.8	0.8532
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10037484 [exp]	10.7	0.8519
AT4G32480			Protein of unknown function (D...		Lus10018603 [exp]	19.1	0.7858
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10000057 [exp]	21.4	0.8193
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Lus10014353 [exp]	21.4	0.7487
AT4G10810			unknown protein		Lus10012620 [exp]	21.9	0.7098
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	25.5	0.8368
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10000422 [exp]	25.7	0.8126
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	28.0	0.8057

Compare expression of checked genes

Lus10013018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.