Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32180 504 / 2e-173 ATPANK2 pantothenate kinase 2 (.1.2.3) AT1G60440 477 / 2e-168 ATCOAA, ATPANK1 pantothenate kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029146 [exp] 784 / 0 AT4G32180 500 / 7e-172 pantothenate kinase 2 (.1.2.3) Lus10009520 [exp] 506 / 2e-172 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10020341 [exp] 503 / 1e-171 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041800 [exp] 563 / 0 AT4G32180 516 / 2e-178 pantothenate kinase 2 (.1.2.3) Potri.008G189500 [exp] 544 / 0 AT4G32180 504 / 7e-174 pantothenate kinase 2 (.1.2.3) Potri.015G077300 [exp] 515 / 8e-176 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.012G081600 [exp] 513 / 4e-175 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03630 [flax] [poplar] Fumble Fumble
Representative CDS sequence Show only first row Show all	>Lus10013019 pacid=23149811 polypeptide=Lus10013019 locus=Lus10013019.g ID=Lus10013019.BGIv1.0 annot-version=v1.0 ATGGGAGAGAATTGTTTAGAGATTGTTGAAGAAGATCAAATTCAACCCATTGGTCAAATATCTCATTTGGCCTTGGATATTGGAGGAACGTTAATAAAGA TGGTATATTTCTGTAGAGATAGTAATGGTTGTAGTAGTGATGATGTTAAAAATCAGGAGTGTTCTTCAAATGGGAAGGAGCATCATGCTGCTACTATTGA AGGAAGTCTTCATTTTGCCAAGCTGGAAACAACCAAGATAAATGAGTGCTTAGAGTACATAAAGTCAAAGAAGCTTCAGTTTGATGGTTTTCTGCATCAC GAGAATACCAGCAAGGACACAAATTTCATTAAGGCCACAGGTGGTGGAGCACATAAATTTTCGGATCTTTTCAAAGAAAACCTTAGCATTACTCTCGAAA AGGAGGACGAAATGGACTGTCTTGTAGCTGGAGCCAACTTTTTGCTCAAGGCAGTCCGTCGCGAAGCATTCACATACATAGACGACGTGAAGGAGTTTGT GGAGATTGATCAAAATGATTTGTATCCCTATCTGCTGGTTAACATTGGATCTGGTGTTAGCATAATAAAGGTCGATGGAGATGGAAAATTCGAGAGAGTT AGTGGAACAAGTGTCGGAGGGGGTACTTTTTGGGGCTTGGGAAGGTTACTGACCAAATGCAAGAGCTTTGATGAGTTGCTGGAGTTGAGTCATCAAGGAA ATAACCGTGTGATCGACATGCTTGTTGGAGATATTTATGGTGGAATGGATTATTCCAAGGTCGGTCTCACATCTACAACTATTGCTTCCAGCTTTGGCAA GGCGATTTCTGGCCACAAGGAGCTAGAAGATTACAAACCGGAAGATATTGCACGATCACTTCTCCGAATGATTTCAAACAACATTGGACAGATTGCTTAC TTGAACGCACTGCGATTCGGCCTAAAGAGGGTATTTTTCGGTGGATTTTTCATCCGGGGACAGTCATACACAATGGACACTATATCCGTCGCAGTTAATT TCTGGTCCAAAGGAGAAGCAAAAGCTATGTTCTTGCGGCACGAAGGATTTCTGGGAGCAATGGGCGCCTTTGTTAGCTACGACAAACAGCGTCTTGATGA CTTATTGGCACGAAACTCGTTGCAGCTACAAGTTGGGACATCCCATCCTGTCGATACAGATTCTGCTACCGTAACTGGAGAATTTATAGAGAATGAAACC ATTAATTGCACTATAATTAGATCTTAG
AA sequence Show only first row Show all	>Lus10013019 pacid=23149811 polypeptide=Lus10013019 locus=Lus10013019.g ID=Lus10013019.BGIv1.0 annot-version=v1.0 MGENCLEIVEEDQIQPIGQISHLALDIGGTLIKMVYFCRDSNGCSSDDVKNQECSSNGKEHHAATIEGSLHFAKLETTKINECLEYIKSKKLQFDGFLHH ENTSKDTNFIKATGGGAHKFSDLFKENLSITLEKEDEMDCLVAGANFLLKAVRREAFTYIDDVKEFVEIDQNDLYPYLLVNIGSGVSIIKVDGDGKFERV SGTSVGGGTFWGLGRLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKVGLTSTTIASSFGKAISGHKELEDYKPEDIARSLLRMISNNIGQIAY LNALRFGLKRVFFGGFFIRGQSYTMDTISVAVNFWSKGEAKAMFLRHEGFLGAMGAFVSYDKQRLDDLLARNSLQLQVGTSHPVDTDSATVTGEFIENET INCTIIRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	0	1
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	1.0	0.9746
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	2.2	0.9612
AT2G31090			unknown protein		Lus10017667 [exp]	2.8	0.9602
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018702 [exp]	3.5	0.9642
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10043220 [exp]	3.9	0.9557
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	4.5	0.9624
AT5G58800			Quinone reductase family prote...		Lus10005862 [exp]	4.5	0.9539
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10022616 [exp]	4.7	0.9584
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	4.7	0.9655
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	5.3	0.9604

Compare expression of checked genes

Lus10013019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.