Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47180 335 / 6e-114 ATGOLS1 galactinol synthase 1 (.1) AT1G09350 329 / 1e-111 ATGOLS3 galactinol synthase 3 (.1) AT1G60470 328 / 1e-111 ATGOLS4 galactinol synthase 4 (.1) AT1G56600 327 / 8e-111 ATGOLS2 galactinol synthase 2 (.1) AT5G14670 311 / 5e-107 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G70490 311 / 9e-107 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G10630 311 / 9e-107 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G23490 311 / 9e-107 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT2G47170 310 / 2e-106 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 308 / 5e-106 ATARFA1E ADP-ribosylation factor A1E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029145 [exp] 402 / 5e-140 AT2G47180 493 / 1e-176 galactinol synthase 1 (.1) Lus10010897 [exp] 325 / 9e-110 AT2G47180 533 / 0.0 galactinol synthase 1 (.1) Lus10031434 [exp] 322 / 1e-108 AT2G47180 543 / 0.0 galactinol synthase 1 (.1) Lus10030884 [exp] 313 / 2e-107 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 313 / 5e-107 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 314 / 2e-106 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 310 / 2e-106 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 314 / 8e-104 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 312 / 4e-97 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G116800 [exp] 343 / 3e-117 AT2G47180 568 / 0.0 galactinol synthase 1 (.1) Potri.008G189400 [exp] 335 / 7e-114 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.002G191600 [exp] 331 / 2e-112 AT2G47180 565 / 0.0 galactinol synthase 1 (.1) Potri.010G042000 [exp] 329 / 1e-111 AT1G60470 534 / 0.0 galactinol synthase 4 (.1) Potri.010G150400 [exp] 328 / 1e-111 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.005G006800 [exp] 323 / 3e-109 AT1G56600 539 / 0.0 galactinol synthase 2 (.1) Potri.013G005800 [exp] 322 / 4e-109 AT1G56600 543 / 0.0 galactinol synthase 2 (.1) Potri.013G005500 [exp] 313 / 1e-107 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.014G116500 [exp] 312 / 2e-107 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 312 / 2e-107 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10013020 pacid=23149857 polypeptide=Lus10013020 locus=Lus10013020.g ID=Lus10013020.BGIv1.0 annot-version=v1.0 ATGGGGTTGACGTTCACGAAACTGTTCAGCCGGCTGTTTGCCAAGAAGGAGATGAGAATTCTGATGGTTGGCCTCGATGCAGCTGGTAAGACCACCATCT TGTACAAGCTGAAGCTTGGTGAGATCGTCACCACCATTCCTACCATTGGATTCAATGTGGAGACTGTGGAATACAAGAACATCAGCTTCACAGTGTGGGA TGTCGGGGGTCAAGACAAGATCCGACCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATATTTGTTGTGGACAGTAATGACAGAGATCGTGTT GTTGAGGCCAGAGATGAATTGCATAGGATGTTGAACGAGGACGAACTCCGAGATGCAGTGTTGCTGGTTTTCGCTAACAAGCAGGATCTGCCAAATGCAA TGAATGCCGCTGAGATCACTGACAAGCTCGGCCTCCACTCCCTTCGCCAGCGACACTGTGCTTATCCTCTACTGGTGGCTGTGCTGCCGGACGTGCCGGA GGAGCACCGCCGGCGACTGAAGGATCTAGGGTGTATAGTGACGGAGATTGAGCCCATTTACCCGCCGGCGAATCAGACTCAGTTCGCCATGGCTTACTAC GTCATCAACTACTCTAAGCTCCGCATTTGGAACTTTTCGGATTACAGCAAGATCATATACCTGGACGCCGACATCCAAGTCTACGGCAACATAGACCACC TCTTCGATTCCCCCGACGGCTACTTCTACTCCATCAAGGACTGCGAGCAAACTTGGAGCCACACCCCTCAATACGGTGTCGGATACCGCCAGCAGTGCCC CGACAAGGTGATGTGGCCGGCTAACCACGCAATGGGCCCACCTCCTCCTCTATACTTCAACGCTGGCATGTTCGTCTTTGAGCCTAACCGTTCCACGTAC GATGCCTTGCTGGAGAGGCTCGCCGTCAGTCCTACGCCGCCGTTTGCTGAGCAGGATTTCTTGAACATGTTTTCCCGGGAGATTTACAAGCCTATTCTGT TAGTTTACAATTTGGTCCTTGCCATGCTGTGGCGCCACCCTGAGAATGTCGACGTGGACGAGGTCAAAGTCGTCCATTACTGTGCTACTGTGAGTTAA
AA sequence Show only first row Show all	>Lus10013020 pacid=23149857 polypeptide=Lus10013020 locus=Lus10013020.g ID=Lus10013020.BGIv1.0 annot-version=v1.0 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHCAYPLLVAVLPDVPEEHRRRLKDLGCIVTEIEPIYPPANQTQFAMAYY VINYSKLRIWNFSDYSKIIYLDADIQVYGNIDHLFDSPDGYFYSIKDCEQTWSHTPQYGVGYRQQCPDKVMWPANHAMGPPPPLYFNAGMFVFEPNRSTY DALLERLAVSPTPPFAEQDFLNMFSREIYKPILLVYNLVLAMLWRHPENVDVDEVKVVHYCATVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10013020 [exp]	0	1
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	2.0	0.8667
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	2.4	0.8761
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	6.3	0.8392
AT4G17100			unknown protein		Lus10001086 [exp]	8.1	0.7952
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	9.3	0.8485
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	9.5	0.8006
AT3G51580			unknown protein		Lus10025140 [exp]	9.8	0.8116
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10041800 [exp]	9.8	0.8242
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	10.5	0.8275
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10000763 [exp]	12.7	0.8222

Compare expression of checked genes

Lus10013020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.