Plant FIBer expression Database

Lus10013022 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G24560 527 / 4e-180 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029143
[exp]
1054 / 0 AT1G24560 613 / 0.0 unknown protein
Lus10025844
[exp]
594 / 0 AT1G24560 750 / 0.0 unknown protein
Lus10038257
[exp]
586 / 0 AT1G24560 736 / 0.0 unknown protein
Lus10007123
[exp]
98 / 8e-25 AT1G24560 52 / 9e-10 unknown protein
Lus10027489
[exp]
81 / 1e-15 AT3G49055 244 / 3e-75 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G183800
[exp]
613 / 0 AT1G24560 691 / 0.0 unknown protein
Potri.010G049400
[exp]
593 / 0 AT1G24560 642 / 0.0 unknown protein
Potri.008G184600
[exp]
299 / 2e-96 AT1G24560 302 / 2e-97 unknown protein
Potri.015G146100
[exp]
79 / 5e-15 AT3G49055 191 / 1e-54 unknown protein
PFAM info
Representative CDS sequence
>Lus10013022 pacid=23149872 polypeptide=Lus10013022 locus=Lus10013022.g ID=Lus10013022.BGIv1.0 annot-version=v1.0
ATGGCGGGAGCCGGAGGCGAAGAGCTTGACTCGGTGTTGAGCGACGTGGAGGAGGAGGAGGATCAGCCGGCGCCGATCGTGATTTTCAAGAACCAGAAGC
AACCTAAGCATGTTTCTGTCGATAGATACACGGAGCTCCTGGAGGAGCTCGACCGCGAGCGGGAGGCTCGGCGAGCGGCGGAGGATTCGAAGGCCGAGCT
GCTTGAGAAGTTCGATCGAGTTAGGAGAGTTGCTCAGGAGGCAATCCAGAAGCGAGACGAGGCCATGAGGGAGAGTGAGAAGATTGCGGTTGAAGTCAGC
GAGGTTGCCGATCAGCGGGACGAGATAGCGAGGCAGCTGGATGGAGCGATTAAAACGAGGGATTCTATGCGGCTGGAGATGGAGAACTCGAGGCATTTGC
TGGTGAGCGGGATTGAGAAGATATCGGGGAAATTGAGGGACTACAGGAACTTCACCGCCGGCGGATTGCCGCAGTCGTCGAAGTACAGCGGACTTCCGGC
GGTTGCGTACGGAGTTCTGAAGAGAACGATTGAGATCGTTGAGGAGCTCGTGCAGCAGATTCATGCAGCGAATCAGTCGAGGAACGATGCTAGGGATCAG
ATGGAGCAGAGGAATTTCGAAATTGCGATTGAGGTTTCTGAGCTCGAAGCGACGATCGGCGGTCTGAGACTGGAATTGGAAGGGAAGACGGCGTTGATAG
GGAAGTTGGAGAAGACAGCTGCGGAGAAGGAAAGTATGGCGTCTGAGATTGAGAGAGGGATGTGGGAGAAGGCGGAATTGGAAGACAGATTGAGGAGTCT
GGAGTCGAAGATGGAATATTTAAAGCCTTTACTGGTCGATCAATTCAATCTAACCTGGAAAATTCATGATCAGCTTTTTGATGCCATGAAGATCGTTGAT
AAGAACTATCAACACAGTGAAATCCCACAGTCCTTATTCGTCCAAGAAGAGAAAGACATTGGCGAAAACCTGAGAGGTTCCTTATCCGGAATGGAATCGA
TTCATGAGTTGACTAGAATCTTAGGTGAAAAGATGAAGGATGTGATGCAGGTGAAGAATCATGAACTGAAGCGTTGTGATGAAACAGTAGGTCAGCTGGT
TAAGGAGAAAGAGTATATTAGTTATCTACTAAGGAGTGCTTTGTCAATGAGACCCACTTGGGATTCATCTTCCAAAGCGAAAGATTTGTTTCAAGCTGCA
GAAAATGGTCTGAGAGATGCGGGCATCGATTTTAAGTTCAGCAAGGTTCTTGGTGATCACAAATTTCCAGGTTCACTGGACTCGGAGGAGGGCGAAATAT
ACACCCTGGCGGGTGCTTTGGAGAAAGTCGTAAAGGCTTCTCAGCTTGAGATCATCGAGTTGCGGCATCGTGTGGAGGAACTTAGAAATGAATCAATTTT
ACTGAAGGAGGAGATAGAGATCCAAGCTAAGGAACAAAGTAACAAGATGCACAGAATAGAGGAACTTGAAGGTAAAGAAAGAGCAGCAAACGAGAATATG
GAAGGGTTGATTATGGATATTACTGCAGCAGAGGAAGAGATTCTAAGATGGAAAGTAACAGCAGAACGCGAGGCTGCTGCAGGTCATGCTGTTGAAAAAG
ACTTCATTGCTCAGGTATCGACGCTTAGAAATGAGCTCGAAGAGGCGAAGCAAGCGACACTAGAGTTAGAGAAGAAGCTAAAGTTCAAAGAAGAGACTGC
AAATGCAGCGATGGCAGCACGAGAGGCTGCCGAGAAGTCTCTGAGTTTGGCAGACGTGAGGGCCACCAGGCTGAGGGAGAGGATCGAGGAGCTCAGCAGT
CGGCTCGAAGAGTTTGAAACGCGAGAAGACACAGGTGGTGGTCGAAGTAGACACAGATACGTATGTTGGCCGTGGCAGTTGCTAGGGTTAGATATCGTCG
GGACTTCGGTAGAAGCACCGGGACACATCTGCAATGAAATGGAGCTCTCTGAACCCCTCTTATGA
AA sequence
>Lus10013022 pacid=23149872 polypeptide=Lus10013022 locus=Lus10013022.g ID=Lus10013022.BGIv1.0 annot-version=v1.0
MAGAGGEELDSVLSDVEEEEDQPAPIVIFKNQKQPKHVSVDRYTELLEELDREREARRAAEDSKAELLEKFDRVRRVAQEAIQKRDEAMRESEKIAVEVS
EVADQRDEIARQLDGAIKTRDSMRLEMENSRHLLVSGIEKISGKLRDYRNFTAGGLPQSSKYSGLPAVAYGVLKRTIEIVEELVQQIHAANQSRNDARDQ
MEQRNFEIAIEVSELEATIGGLRLELEGKTALIGKLEKTAAEKESMASEIERGMWEKAELEDRLRSLESKMEYLKPLLVDQFNLTWKIHDQLFDAMKIVD
KNYQHSEIPQSLFVQEEKDIGENLRGSLSGMESIHELTRILGEKMKDVMQVKNHELKRCDETVGQLVKEKEYISYLLRSALSMRPTWDSSSKAKDLFQAA
ENGLRDAGIDFKFSKVLGDHKFPGSLDSEEGEIYTLAGALEKVVKASQLEIIELRHRVEELRNESILLKEEIEIQAKEQSNKMHRIEELEGKERAANENM
EGLIMDITAAEEEILRWKVTAEREAAAGHAVEKDFIAQVSTLRNELEEAKQATLELEKKLKFKEETANAAMAAREAAEKSLSLADVRATRLRERIEELSS
RLEEFETREDTGGGRSRHRYVCWPWQLLGLDIVGTSVEAPGHICNEMELSEPLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G24560 unknown protein Lus10013022
[exp]
0 1
AT1G12550 HPR3 hydroxypyruvate reductase 3, D... Lus10006708
[exp]
3.2 0.9288
AT5G46840 RNA-binding (RRM/RBD/RNP motif... Lus10004563
[exp]
5.0 0.9200
AT4G09670 Oxidoreductase family protein ... Lus10020317
[exp]
6.8 0.8918
AT2G43320 S-adenosyl-L-methionine-depend... Lus10015953
[exp]
8.1 0.9240
AT5G18610 Protein kinase superfamily pro... Lus10033966
[exp]
11.0 0.9018
AT1G18680 HNH endonuclease domain-contai... Lus10003480
[exp]
11.8 0.9023
AT3G22560 Acyl-CoA N-acyltransferases (N... Lus10021914
[exp]
12.5 0.9101
AT5G03700 D-mannose binding lectin prote... Lus10014371
[exp]
13.4 0.9231
AT5G61510 GroES-like zinc-binding alcoho... Lus10009658
[exp]
14.1 0.9182
AT4G25770 alpha/beta-Hydrolases superfam... Lus10001320
[exp]
15.0 0.9128

Lus10013022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.