Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60550 501 / 4e-180 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT4G16800 107 / 1e-26 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G16210 104 / 6e-26 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT5G43280 72 / 3e-14 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT5G65940 59 / 1e-09 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT4G29010 59 / 2e-09 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT2G30660 56 / 1e-08 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 54 / 7e-08 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G06860 49 / 3e-06 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT3G24360 42 / 0.0006 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029142 [exp] 632 / 0 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10016920 [exp] 102 / 3e-25 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10010994 [exp] 98 / 6e-23 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10016919 [exp] 72 / 4e-15 AT4G16210 206 / 1e-67 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10037777 [exp] 76 / 5e-15 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10011336 [exp] 74 / 8e-15 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10002583 [exp] 72 / 2e-14 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10006501 [exp] 67 / 4e-12 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10037495 [exp] 67 / 8e-12 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329900 [exp] 535 / 0 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Potri.001G153300 [exp] 109 / 2e-27 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.010G146400 [exp] 108 / 2e-27 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.008G104500 [exp] 106 / 1e-26 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.001G061000 [exp] 86 / 6e-19 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.003G080800 [exp] 72 / 4e-14 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.010G011900 [exp] 69 / 1e-12 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.010G170200 [exp] 65 / 2e-11 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 65 / 2e-11 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 64 / 2e-11 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10013023 pacid=23149838 polypeptide=Lus10013023 locus=Lus10013023.g ID=Lus10013023.BGIv1.0 annot-version=v1.0 ATGGCGACGATCTCAGAGAAAGAACTCGACGCCATGAAGAGGAGAGTTGGAGCAGTGGCCAGCCACATCAATCCTCTATTCTCGGTTCCAACTCCAAGCT CCAGCAGCTCGATCATCGGGTTTCACAGCACTTCCTCCGTGGCCGATAGCTACCACAGAATTCACGGCCAAGTGTCGACGAAGGAAGTCGTCTGGAGTGT CTCCGGCGGGGAGAAATACACCGACATTGTATATGAGAAAGCAGTCGGCGAAGGGATTGCCAAGATTACAATTAATAGGCCGGAGAGAAGAAATGCGTTC CGACCACTAACGGTAAAGGAGATGATTCGGGCGTTCGATCATGCCAGAGAGGATACTTCCATCGGAGTTATAATCCTCACCGGAAAGGGAACGAAAGCAT TCTGCAGCGGCGGCGACCAAGCATTGAGGACGAAAGACGGCTACGCTGATCCTAACGATACCGGCCGTCTCAATGTTCTCGATTTGCAGGTCCAGATCCG CCGTCTTCCCAAGCCCGTCATAGCAATGGTTGCTGGTTATGCTGTGGGAGGGGGACATGTACTCCACATGGTATGCGATCTCACGATTGCAGCTGACAAT GCTGTTTTTGGCCAAACAGGTCCTAAGGTTGGTAGTTTCGACGGTGGCTATGGAAGCTCTATCATGTCCCGCTTGGTTGGCCCGAAAAGGGCTCGAGAGA TGTGGTTTCTAGCAAGGTTCTACTCGGCTTCGGAAGCAGAGAGAATGGGGCTAGTCAACACTGTTGTGCCATTGGATAAGTTGGAGGAAGAGACAGTACA ATGGTGTCGAGAGATACTGAGGAACAGTCCGACAGCGATTCGAATTCTCAAGTCGTCTCTCAATGCTGTTGACGATGGCCATGCCGGCCTCCAGGAGCTT GCTGGGAATGCCACACACCTCTTCTACCGTACCGAGGAAGGCAATGAAGGGAAGACGGCTTACATGGAAAGAAGGCCACCAGATTTCTCAAAGTTCCCTC GACTTCCTTGA
AA sequence Show only first row Show all	>Lus10013023 pacid=23149838 polypeptide=Lus10013023 locus=Lus10013023.g ID=Lus10013023.BGIv1.0 annot-version=v1.0 MATISEKELDAMKRRVGAVASHINPLFSVPTPSSSSSIIGFHSTSSVADSYHRIHGQVSTKEVVWSVSGGEKYTDIVYEKAVGEGIAKITINRPERRNAF RPLTVKEMIRAFDHAREDTSIGVIILTGKGTKAFCSGGDQALRTKDGYADPNDTGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN AVFGQTGPKVGSFDGGYGSSIMSRLVGPKRAREMWFLARFYSASEAERMGLVNTVVPLDKLEEETVQWCREILRNSPTAIRILKSSLNAVDDGHAGLQEL AGNATHLFYRTEEGNEGKTAYMERRPPDFSKFPRLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10013023 [exp]	0	1
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10029142 [exp]	1.0	0.9552
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	4.5	0.9163
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	4.6	0.9177
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	4.9	0.9233
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	11.2	0.9113
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10029675 [exp]	12.0	0.8122
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10031342 [exp]	12.7	0.9008
AT4G30845			unknown protein		Lus10026098 [exp]	13.4	0.8973
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	13.9	0.8978
AT3G47490			HNH endonuclease (.1.2.3)		Lus10019092 [exp]	15.2	0.8456

Compare expression of checked genes

Lus10013023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.