Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18770 223 / 4e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G05670 215 / 3e-68 signal recognition particle binding (.1.2) AT3G12050 206 / 5e-64 Aha1 domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029130 [exp] 290 / 6e-97 AT5G05670 368 / 2e-129 signal recognition particle binding (.1.2) Lus10030896 [exp] 254 / 5e-83 AT5G05670 350 / 1e-122 signal recognition particle binding (.1.2) Lus10013031 [exp] 252 / 1e-82 AT5G05670 357 / 2e-125 signal recognition particle binding (.1.2) Lus10030593 [exp] 248 / 6e-80 AT5G05670 352 / 7e-122 signal recognition particle binding (.1.2) Lus10021072 [exp] 239 / 3e-76 AT3G12050 523 / 0.0 Aha1 domain-containing protein (.1.2) Lus10017240 [exp] 173 / 6e-51 AT3G12050 444 / 6e-157 Aha1 domain-containing protein (.1.2) Lus10029141 [exp] 108 / 1e-29 AT3G12050 96 / 7e-26 Aha1 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020900 [exp] 225 / 3e-72 AT5G05670 388 / 6e-138 signal recognition particle binding (.1.2) Potri.016G060100 [exp] 210 / 5e-65 AT3G12050 480 / 5e-171 Aha1 domain-containing protein (.1.2) Potri.006G194400 [exp] 207 / 6e-64 AT3G12050 473 / 3e-168 Aha1 domain-containing protein (.1.2) Potri.009G001600 [exp] 122 / 2e-33 AT5G05670 206 / 2e-67 signal recognition particle binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08327 [flax] [poplar] AHSA1 Activator of Hsp90 ATPase homolog 1-like protein CL0023 [flax] [poplar] P-loop_NTPase PF09439 [flax] [poplar] SRPRB Signal recognition particle receptor beta subunit
Representative CDS sequence Show only first row Show all	>Lus10013024 pacid=23149825 polypeptide=Lus10013024 locus=Lus10013024.g ID=Lus10013024.BGIv1.0 annot-version=v1.0 ATGTTTTCATCTAGCGCCGGCGCCCTCATTTTTGAAAATCCACCAACTCCAGAATCCATATTTGATAAGGAAGGGAATGGGCTAGGCCTGAAGTTGATTC AGGCTGTATTTATCAAACTGAATTCTCGAATATACTTTAACTCATTCAACGGGCCAGATCACCATTGCATTAACAGACCTCCTGTTCAGCTCTACTCCGC TGCTGCTGTGGTGCTCTTCACTTCTCTTTTGTTCATCCTAGTTGCCTTGTTTAGACGCCCGAAATCTAATACGATTGTCTTGTCCGGACTCAGTGGTAGT GGAAAGACCATCCTTTTCTATCAGCTTCGAGACGGCTCATCTCATCAGGGTACCATAACTTCAATGGAACCAAATGAGGGCACTTTCATACTCCATTCTG TAGCAGGCAAGGGGCACAAAGTGAAGCCTGTCCACCTCGTTGATGTTCCTGGCCTGAAGCAGCTGGAATTGTCTTTGTATCTGTATGATATCCTCACTAA CGCTAGTCTGGTGAAAAAGAAAGTCCCTGTCTTGATTTGCTGCAACAAAACTGAGAAGGTCACTGCACACACCAAGGATTTCATCTGTAAACAGCTTGAA AAAGAGATCGACAAGCTGCGAGCATCGAGAAGCCCCGTTTCGGATGCTGATGTGGTGAACAACCACACGCTCGGTCCAAGGGCGAGGGATCTGTTCGAGA TACTGTTGGATGAGAACAGGTGGAAAGGATTCACGCAGAGGAATGCCAAGATTAGTAAGGAAGTTGGTGGAGAGTTTGCAATTTTTTATGGGTCGGTTAC AGGGTCGAATGTGGAGTTGCAGGAGCGGAAATTGATTGTGCAGAAGTGGAGGTTTGGGAGCTGGCCTGATGAGATCTTCGCCACTGTGAGATTCACATTG GAAGAACCTGAAGCTGGTGTGACGGTGGTGAAGCTGACTCACACTAATATACCAGAGGAGGATAGATATGGAAATGCAACTGTTGTTGAGAAAACTGAGA GGAGATGGAGGGATCTCATCTTCCACAAGATAAGAGCAGTTTTTGGGTTTGGCATGAAGAATGAATGA
AA sequence Show only first row Show all	>Lus10013024 pacid=23149825 polypeptide=Lus10013024 locus=Lus10013024.g ID=Lus10013024.BGIv1.0 annot-version=v1.0 MFSSSAGALIFENPPTPESIFDKEGNGLGLKLIQAVFIKLNSRIYFNSFNGPDHHCINRPPVQLYSAAAVVLFTSLLFILVALFRRPKSNTIVLSGLSGS GKTILFYQLRDGSSHQGTITSMEPNEGTFILHSVAGKGHKVKPVHLVDVPGLKQLELSLYLYDILTNASLVKKKVPVLICCNKTEKVTAHTKDFICKQLE KEIDKLRASRSPVSDADVVNNHTLGPRARDLFEILLDENRWKGFTQRNAKISKEVGGEFAIFYGSVTGSNVELQERKLIVQKWRFGSWPDEIFATVRFTL EEPEAGVTVVKLTHTNIPEEDRYGNATVVEKTERRWRDLIFHKIRAVFGFGMKNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18770			P-loop containing nucleoside t...		Lus10013024 [exp]	0	1
AT2G39910			ARM repeat superfamily protein...		Lus10040233 [exp]	1.4	0.7986
AT1G17665			unknown protein		Lus10006153 [exp]	6.0	0.7327
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10028252 [exp]	8.3	0.7156
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	18.2	0.7615
					Lus10038470 [exp]	18.7	0.7012
AT3G23950			F-box family protein (.1)		Lus10013987 [exp]	21.8	0.7031
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	23.6	0.7243
AT1G28100			unknown protein		Lus10002573 [exp]	25.7	0.7468
AT3G49550			unknown protein		Lus10000077 [exp]	25.9	0.6342
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	56.1	0.7195

Compare expression of checked genes

Lus10013024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.