Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60590 623 / 0 Pectin lyase-like superfamily protein (.1) AT1G10640 622 / 0 Pectin lyase-like superfamily protein (.1) AT5G14650 495 / 9e-174 Pectin lyase-like superfamily protein (.1) AT3G26610 376 / 2e-126 Pectin lyase-like superfamily protein (.1) AT1G48100 352 / 9e-117 Pectin lyase-like superfamily protein (.1) AT1G02460 332 / 8e-109 Pectin lyase-like superfamily protein (.1) AT1G56710 320 / 4e-105 Pectin lyase-like superfamily protein (.1) AT4G01890 318 / 6e-104 Pectin lyase-like superfamily protein (.1) AT1G23460 293 / 5e-94 Pectin lyase-like superfamily protein (.1) AT1G70500 285 / 3e-91 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029140 [exp] 801 / 0 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 743 / 0 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 728 / 0 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 399 / 4e-135 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 336 / 2e-110 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 332 / 1e-108 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 323 / 7e-106 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 323 / 9e-106 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 284 / 3e-90 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042100 [exp] 677 / 0 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 646 / 0 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 510 / 1e-178 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.008G188300 [exp] 383 / 7e-129 AT3G26610 545 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G044001 [exp] 379 / 2e-127 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 357 / 6e-119 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 355 / 3e-117 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 349 / 9e-116 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 349 / 1e-115 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 346 / 2e-114 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10013025 pacid=23149820 polypeptide=Lus10013025 locus=Lus10013025.g ID=Lus10013025.BGIv1.0 annot-version=v1.0 ATGAGAGGGCTGAGTTTCAGAAGCTTCACATTCATGGTGTTGATTGCATTTCTAGTTTGGAGCTCAAGTATAGATACTTGCATTGCTAGAAGCAGCAGGC ATTGGAGGCATCACAGGGGGTCTGCAGCTTCTTTCATGAAGAAGAAAGGCAAGAGTCATGGAAGCAGCAATCACCACAGCAATAATCACAATGGCGGAGG ATCTTATTTGACTAAATTTGACCACATTAGCGATTCCAAAAGACATACTGATGACAGAACAGCATTCCAGGCTACATGGGCAGCTGCTTGTAAAGTTGAG AAATCAGTGATGTTTGTTCCAGAGGGATATCAATTCCTAGTAGGACCAATTTCTTTCGCCGGCCCATACTGCCAGAAAAGCATCACCTTCCAGCTGGATG GGACAATTGTGGCACCAACAAACTCCTACGTTTGGGGCAAAGGTTTGTTTCAGTGGCTGGAATTCACCAAGCTTGTACAGATCACGATTCAAGGTAAAGG CACCATTGATGGGAGTGGTTCAGTGTGGTGGCAAGACAGCCCTCTTAGTGAACCTGAAGATGACTTATCACACCAGATAATCCTGTTGAATGACACGTTG GAGACACGTCCACCGATGCCGGTAAGAAGTGAACTCAGCAGCAAAATGCCAAGCCAGAAGCCAACGGCACTGAGGTTTTACGGAAGTCTGAATGTGACGG TCACAGGCATAACAATACAGAATAGTCCTCAATGCCACCTGAAGTTTGACAACTGCATTGGAGTCATGGTGCATCACATAAGTGTTTCATCTCCTGGAGA TAGTCCTAATACAGATGGAGTCCACTTGCAGAATTCCAGAGACGTGCTAATACACAGCAGCAGCCTTGCATGCGGGGATGATTGCATTTCCATACAGACA GGATGCACAAATGTGTACATACATGATGTCAACTGTGGTCCGGGACATGGTATAAGTATCGGCAGTTTGGGAAAGGACAATACACGAGCCTGTGTCTCTA ATGTTACTGTGAAGAATGTCAATATGCACAACACAATGACTGGTGTCAGGATTAAGACATGGCAGGGAGGATCAGGCTCTGTGTATGGGATTATGTTCTC AAACATTCAAGTTTCAGAAGTCCAGTTCCCAATTGTGATTGACCAATTCTACTGTGACAAGTCCACATGCAAAAACCAATCATCAGCAGTAGCAGTATCA GGGATCAACTACGAGAGAATCAAAGGAACGTACACGGTAAAACCTGTGCATTTCGCCTGCAGCGACAGCCAACCATGTGCAGACATAAGTTTAGCAAACA TCGAGTTGAAACCGATACAAGAAAAGTACCGCATGTACGATCCTTACTGCTGGGAGACATTTGGAGAGTTGAATACTCCCACCGTCCCTCCGATTGGATG TCTCCAAATTGGTAAGCCATCAAGCAACCATCCCCACCAAACCGATCATGATACCTGTTGA
AA sequence Show only first row Show all	>Lus10013025 pacid=23149820 polypeptide=Lus10013025 locus=Lus10013025.g ID=Lus10013025.BGIv1.0 annot-version=v1.0 MRGLSFRSFTFMVLIAFLVWSSSIDTCIARSSRHWRHHRGSAASFMKKKGKSHGSSNHHSNNHNGGGSYLTKFDHISDSKRHTDDRTAFQATWAAACKVE KSVMFVPEGYQFLVGPISFAGPYCQKSITFQLDGTIVAPTNSYVWGKGLFQWLEFTKLVQITIQGKGTIDGSGSVWWQDSPLSEPEDDLSHQIILLNDTL ETRPPMPVRSELSSKMPSQKPTALRFYGSLNVTVTGITIQNSPQCHLKFDNCIGVMVHHISVSSPGDSPNTDGVHLQNSRDVLIHSSSLACGDDCISIQT GCTNVYIHDVNCGPGHGISIGSLGKDNTRACVSNVTVKNVNMHNTMTGVRIKTWQGGSGSVYGIMFSNIQVSEVQFPIVIDQFYCDKSTCKNQSSAVAVS GINYERIKGTYTVKPVHFACSDSQPCADISLANIELKPIQEKYRMYDPYCWETFGELNTPTVPPIGCLQIGKPSSNHPHQTDHDTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10640			Pectin lyase-like superfamily ...		Lus10013025 [exp]	0	1
AT3G48300		CYP71A23	"cytochrome P450, family 71, s...		Lus10019157 [exp]	4.7	0.6603
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037392 [exp]	5.3	0.6319
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	10.5	0.6460
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	12.7	0.6407
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	20.5	0.6296
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	22.4	0.6296
					Lus10000380 [exp]	24.2	0.6296
					Lus10027544 [exp]	24.7	0.6236
					Lus10010383 [exp]	25.9	0.6296
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10024449 [exp]	26.3	0.6286

Compare expression of checked genes

Lus10013025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.