Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23440 309 / 6e-108 Peptidase C15, pyroglutamyl peptidase I-like (.1.2) AT1G56700 273 / 8e-94 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029137 [exp] 446 / 5e-162 AT1G23440 311 / 8e-109 Peptidase C15, pyroglutamyl peptidase I-like (.1.2) Lus10001521 [exp] 257 / 5e-86 AT1G56700 312 / 2e-107 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Lus10031438 [exp] 177 / 1e-52 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G005800 [exp] 276 / 4e-95 AT1G56700 335 / 5e-118 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Potri.013G005100 [exp] 274 / 4e-94 AT1G56700 344 / 1e-121 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0379 [flax] [poplar] PgaPase PF01470 [flax] [poplar] Peptidase_C15 Pyroglutamyl peptidase
Representative CDS sequence Show only first row Show all	>Lus10013026 pacid=23149817 polypeptide=Lus10013026 locus=Lus10013026.g ID=Lus10013026.BGIv1.0 annot-version=v1.0 ATGGGATCAGAAGCACCAAAGTCTGTAGTCGTCCACGTGACCGGATTCAAGAAATTCCAAGGTGTGACCCAGAATCCGACCGAGACTATAGTGAACAGGC TCAAGGATTACGTCGCAAAGCGAGGATTGCTTGCTGGCGTTACGCTAGGCAGTTGCACTATCCTCGAAACGGCTGGAGATGGAGCTCTTACCATGCTCCA CAACACTCTCGAATCAAACACCACCGCCACAATGAATGCAGAGAAGAACGAGCAAGTTGTCTGGCTTCACTTGGGGGTGAACAGCGGGGCAGTGAAGTTC GCCATTGAACGATGTGCAGTTAATGAAGCCACTTTTCGATGCCCCGATGAGATGGGATGGCAACCTCAGAACCATCCTATAATCTCGGAAGATGGAGAAA TTACTTGTCTAAGACAGACGTGGTGCCCGGTCGATGGTATCTTCATATACTTGAGGAAGAAAGGCTTCGATGCTACGATATCAGATGATGCTGGACGCTA TGTCTGCAACTATGTATACTATCATTCGCTCAAGTTCGCCCAGCAGAAGGGCCACAAGTCTCTATTCGTTCATGTCCCGCTCTTCTCGAGAATCGACGAG GAGACCCAGATGGAGTTTGTGGCGTCTGTTGTAGAAGCTATAGGATCCACCTGTTAA
AA sequence Show only first row Show all	>Lus10013026 pacid=23149817 polypeptide=Lus10013026 locus=Lus10013026.g ID=Lus10013026.BGIv1.0 annot-version=v1.0 MGSEAPKSVVVHVTGFKKFQGVTQNPTETIVNRLKDYVAKRGLLAGVTLGSCTILETAGDGALTMLHNTLESNTTATMNAEKNEQVVWLHLGVNSGAVKF AIERCAVNEATFRCPDEMGWQPQNHPIISEDGEITCLRQTWCPVDGIFIYLRKKGFDATISDDAGRYVCNYVYYHSLKFAQQKGHKSLFVHVPLFSRIDE ETQMEFVASVVEAIGSTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	1.4	0.9661
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	1.7	0.9633
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	2.0	0.9648
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10021198 [exp]	2.8	0.9561
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	2.8	0.9627
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	3.2	0.9620
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	3.2	0.9552
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10000286 [exp]	3.9	0.9511
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	4.2	0.9585
AT1G34320			Protein of unknown function (D...		Lus10018317 [exp]	4.6	0.9489

Compare expression of checked genes

Lus10013026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.