Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10650 382 / 2e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G60610 347 / 3e-119 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G45976 158 / 6e-46 SBP1 S-ribonuclease binding protein 1 (.1) AT1G32740 126 / 1e-33 SBP (S-ribonuclease binding protein) family protein (.1) AT4G17680 123 / 2e-33 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G47050 118 / 6e-31 SBP (S-ribonuclease binding protein) family protein (.1) AT3G12920 107 / 1e-26 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT4G35070 104 / 5e-26 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G79110 101 / 2e-24 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT5G45100 99 / 4e-24 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029136 [exp] 569 / 0 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030597 [exp] 545 / 0 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030599 [exp] 544 / 0 AT1G10650 380 / 4e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030891 [exp] 396 / 2e-139 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10001131 [exp] 166 / 2e-48 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1) Lus10031780 [exp] 102 / 7e-25 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10014118 [exp] 100 / 7e-25 AT4G35070 171 / 7e-54 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10019790 [exp] 98 / 4e-24 AT4G35070 170 / 1e-53 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10018294 [exp] 100 / 1e-23 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042200 [exp] 501 / 3e-180 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G082200 [exp] 299 / 1e-100 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G148600 [exp] 162 / 3e-47 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.014G027000 [exp] 161 / 6e-47 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.002G124700 [exp] 159 / 3e-46 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1) Potri.003G085800 [exp] 147 / 1e-41 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.015G118000 [exp] 111 / 5e-28 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G119200 [exp] 107 / 1e-26 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G439600 [exp] 103 / 3e-25 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.011G142700 [exp] 100 / 1e-23 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013027 pacid=23149803 polypeptide=Lus10013027 locus=Lus10013027.g ID=Lus10013027.BGIv1.0 annot-version=v1.0 ATGCTGGGAGGCAACAGCGGCAATCCCCTTCTTCCAGTTTTTATCGAGGACAACCGCCTTCCTTATCAGAACCACGCTTCAAATCAGCTCCAGTTATTCG GCAACTTGCCGGCTGGTTGTAATGTCGATGCTGTTAACTACTTCGGAAGCGAACACATCTCCCCTATGGTTCAGACCAATAAGCGAAGCAGGGAAGCCGA CGATTTCGGTAGACAACAACAAAAGCTCCAGATTTCGTTGAACTATAACCTATGCCGAGACGAAGTTGACCGTTCAGCAAGTATTCCGGCAAACCCTAAT GCCGTGTCGACCGGATTACGACTCTCGTACGATGATGAGGAGCGTAACTCGTCTCTTACATCCGCAAGTGGAAGCATGACAGCTAAACCTTCGATGATCT TGTCCCTCGGGGACAACATTCGGACTGAGCTTGATCGCCAGAAAGAGGAATTCGATCAGTACATTAAAATTCAGGAAGAGCAGTTGGCCAAGGGGGTAAG AGAAATGAAGCAGAGACACGCTGCTTCGTTTCTCGCTTCTATCGAGAAGGGAGTCACGAAGAAGATCTGCGAGAAAGACATCGAGATAGAAAACATGAAT CGTCGGAACAAGGAATTGATCGACAGGATAAAGCAAGTAGCAACAGAAGCACAGAACTGGCACTACAGAGCCAAGTACAACGAATCTGTCGTAAATGTCC TGAAAGCCAACCTCCAGCAGGCTATCTCGCAAGGAGCCGAACAAGTGAAGGAAGGGTTCGGAGACAGTGAGTTCGACGATGCTGCCTCTTGTGGGCCTTC ATCGAAGTCGAAACCTCTCTCGCGAAGTCACCACTGCAGGGCGTGCAAATCGAGGGAGGTATCGGTGTTGTTAATGCCGTGCAGGCATCTTTGTTTGTGT ATAGACTGTGATATGTTCGTCAATGTTTGTCCTGTATGCCAGTTGATCAAAACCACCAGCATCCAAGTATACTTGTCCTGA
AA sequence Show only first row Show all	>Lus10013027 pacid=23149803 polypeptide=Lus10013027 locus=Lus10013027.g ID=Lus10013027.BGIv1.0 annot-version=v1.0 MLGGNSGNPLLPVFIEDNRLPYQNHASNQLQLFGNLPAGCNVDAVNYFGSEHISPMVQTNKRSREADDFGRQQQKLQISLNYNLCRDEVDRSASIPANPN AVSTGLRLSYDDEERNSSLTSASGSMTAKPSMILSLGDNIRTELDRQKEEFDQYIKIQEEQLAKGVREMKQRHAASFLASIEKGVTKKICEKDIEIENMN RRNKELIDRIKQVATEAQNWHYRAKYNESVVNVLKANLQQAISQGAEQVKEGFGDSEFDDAASCGPSSKSKPLSRSHHCRACKSREVSVLLMPCRHLCLC IDCDMFVNVCPVCQLIKTTSIQVYLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	0	1
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	1.7	0.9230
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021202 [exp]	2.4	0.8803
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	2.8	0.9065
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	4.6	0.8904
AT4G15420			Ubiquitin fusion degradation U...		Lus10015140 [exp]	5.8	0.8472
AT5G17280			unknown protein		Lus10028356 [exp]	7.7	0.8435
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	7.9	0.8768
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	9.5	0.8583
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	9.6	0.8856
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	9.8	0.8736

Compare expression of checked genes

Lus10013027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.