Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23400 572 / 0 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT2G20020 390 / 2e-125 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 257 / 2e-78 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 238 / 7e-72 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G10660 229 / 4e-69 unknown protein AT5G62960 214 / 4e-63 unknown protein AT3G27770 181 / 3e-51 unknown protein AT2G47115 152 / 3e-41 unknown protein AT3G01370 50 / 4e-06 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT4G29750 48 / 2e-05 CRS1 / YhbY (CRM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029134 [exp] 780 / 0 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029133 [exp] 384 / 5e-127 AT1G10660 338 / 5e-115 unknown protein Lus10043237 [exp] 375 / 1e-120 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10011119 [exp] 372 / 1e-119 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10012974 [exp] 355 / 4e-113 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10041383 [exp] 259 / 2e-79 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 227 / 2e-67 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10036545 [exp] 214 / 8e-63 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10027692 [exp] 202 / 3e-59 AT5G62960 355 / 2e-122 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042500 [exp] 593 / 0 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.006G163100 [exp] 387 / 4e-124 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042600 [exp] 278 / 3e-87 AT1G10660 372 / 1e-129 unknown protein Potri.014G074400 [exp] 267 / 3e-82 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.001G423800 [exp] 236 / 2e-71 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.012G082400 [exp] 215 / 2e-63 AT5G62960 387 / 1e-134 unknown protein Potri.015G078200 [exp] 209 / 2e-61 AT5G62960 382 / 8e-133 unknown protein Potri.001G347400 [exp] 201 / 1e-58 AT3G27770 314 / 9e-107 unknown protein Potri.014G115200 [exp] 167 / 5e-46 AT2G47115 340 / 4e-117 unknown protein Potri.002G190200 [exp] 160 / 2e-43 AT2G47115 344 / 1e-118 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10013029 pacid=23149851 polypeptide=Lus10013029 locus=Lus10013029.g ID=Lus10013029.BGIv1.0 annot-version=v1.0 ATGGCGATCATGGCGTCTCTTCAACCAAACTTGTTCTCATCCCTTCCCTCAAAGCCTCCATCCAACGACTCCAATTCTTCCTCTTTCTCTCCACCTCCGC CGCCGATTCCTATCCCGAAATATCCACCGCCGCGCGCAAAATCCAAACCCCCACCTCCAAAGCCAACCAACCCAGCTCTCAAAATGACCCACCGAAGAAC CAAGTACTACAAGCCGGTAAAAGACGGCGTCATCAACACCGATGGGGACCGTTCCGTCTTAATCGGAGAGAACGGCGTCTCCTATCTCCTCCCCGATGCC CCGTTTGAGTTTCAGTTCAGCTACTCGGAGACTCCGAGCGTCAAGCCCTTGGCAATTCGGGAGCCGGCGTTCTTGCCATTCGCTCCTCCGACGATGAATC GTCCGTGGACCGGGAAAGCGCCGCTTAAGCCCAAAAAGAAGAAAATCCCTCTCTTCGATTCATTCAATCCGCCGCCGCCGGAGAAGAAGGGAGTCAAGTT CGTCGAGATGCCCGGACCGTACAAGCTCGGGAAGTACCCTGAGGAATCAATGACCAGGGAGCAGATTTTGGGGGAGCCTTTGACGAGACACGAGATCAGA TTGCTTGTCAAGCCGATGCTTTCTGATAATCGCCAGGTTAATTTAGGGAGGGATGGATTGACTCATAACATGTTGGAATTGGTTCATTCTCATTGGAAGA GGAGGAGAGTTTGTAAAGTTAAGTGTAAAGGAGTTCCCACTGTGGATATGAAGAATGTATGCCGACGTTTGGAGGAGAAGACTGGAGGTAAGATCATTCA TCGAGTGGGTGGAGTTGTGTATCTATTCCGGGGCCGAAACTACAACTATCGATCTCGTCCGCAGTATCCAGTCATGCTGTGGAAGCCAGCTGCTCCGGTT TATCCAAAGCTGATCCAGGAAGCTCCTGAAGGGTTGACGAAAGATGAAGCGGACGAGTTTCGGCGCAAGGGGAAGAAACTCTTGCCCATATCGAAGAACG GCGTGTACATAAACTTGGTGAGAGATGTCAGGACGGGTTTCGATGTTAGTCCTTTGGTGAAGATCGATTGCACGGGGATGCATGCAACTGATTACAAGAA GTTGGGTGCTAAGCTTAAGGAGTTGGTTCCGTGTGTGCTATTGTCATTCGATGACGAGCAGATTCTGATGTGGAGAGGGCGTGACTGGAAGCCAAGATAT CCCGATCTTACTTCAGTTCCAATTCCTTCTTATTCCGCCATTGACATTCCCGGTAAGTCCGAGGATGATCGAAGCGATTCAGATGTCGGAACGGTGAGAT CAAGCCCTAAAATGATGTCCCTGTGGAGCCATGCCCTCGAATCAAGCAAGGCCATTATCCTGGAGAAGATCGATCAGTTAAGCCCAGATGACCTTCTGAC TAAAGTCGAAGAAAGAGGAAGGAGGACAGTCAAAGATGCAACCTTGTATGAAGATGAAGCTTGGAGAACATGCCTGAAGACCATTCATCCTGGTTGGTTG CTAGGTTTTAGGGTAATAGCTTTCGTTGTTCTCTTTCGTTTGATAACTGCGAATGCTGTTAGGGATGGAGGCGACATCTTCATCTTCTATACCCAGTGGA CATTCTCTTTGGTGACAGTCTACTTTGGGCAATGTCCATGTATGGATGTTGCAAACACCGTGGTAGAGCTGACGAGGAAGCTGGAGATTCGTCGAAGCAC TCAAAAGGCTCATCTGCGTTCCATGAACCTCGCTCCGTGCAAATGCCAGCTGGAAATGCATGGAGCTATATCTTTCAAATCACCTTTCAGGTTCGTCTTG TATCCGTTTCTCATGCCTGATAATTTCAAGCTCGATTTCATCAATATATGCATCCATTCAGTCAACGCAGTTTTCCTCCTAGGTGACACCATGTTGAATG GAATGCGTTTTCCTATGTTCCGAATCGCGTACTTCGTGCTGTGGACGAGTGTCTTCGTGGTTTGCCAGTGGATCATCCGTGCCTTTGTTTCGATGTGGTG GCCATATCCATTTCTCGACTTGTCATCGAACCGTGCTCCCTTATGGTACCTCGGAGTAGGAGTCATTCATGTCCCTTGTTTCGGGATATTTGCTCTGATA GTTAGGCTGAAATACTTCTTGCTGACTAGATCATTTCCTGATTCATGCCATGTCTCCAGGTGA
AA sequence Show only first row Show all	>Lus10013029 pacid=23149851 polypeptide=Lus10013029 locus=Lus10013029.g ID=Lus10013029.BGIv1.0 annot-version=v1.0 MAIMASLQPNLFSSLPSKPPSNDSNSSSFSPPPPPIPIPKYPPPRAKSKPPPPKPTNPALKMTHRRTKYYKPVKDGVINTDGDRSVLIGENGVSYLLPDA PFEFQFSYSETPSVKPLAIREPAFLPFAPPTMNRPWTGKAPLKPKKKKIPLFDSFNPPPPEKKGVKFVEMPGPYKLGKYPEESMTREQILGEPLTRHEIR LLVKPMLSDNRQVNLGRDGLTHNMLELVHSHWKRRRVCKVKCKGVPTVDMKNVCRRLEEKTGGKIIHRVGGVVYLFRGRNYNYRSRPQYPVMLWKPAAPV YPKLIQEAPEGLTKDEADEFRRKGKKLLPISKNGVYINLVRDVRTGFDVSPLVKIDCTGMHATDYKKLGAKLKELVPCVLLSFDDEQILMWRGRDWKPRY PDLTSVPIPSYSAIDIPGKSEDDRSDSDVGTVRSSPKMMSLWSHALESSKAIILEKIDQLSPDDLLTKVEERGRRTVKDATLYEDEAWRTCLKTIHPGWL LGFRVIAFVVLFRLITANAVRDGGDIFIFYTQWTFSLVTVYFGQCPCMDVANTVVELTRKLEIRRSTQKAHLRSMNLAPCKCQLEMHGAISFKSPFRFVL YPFLMPDNFKLDFINICIHSVNAVFLLGDTMLNGMRFPMFRIAYFVLWTSVFVVCQWIIRAFVSMWWPYPFLDLSSNRAPLWYLGVGVIHVPCFGIFALI VRLKYFLLTRSFPDSCHVSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	0	1
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	2.0	0.9240
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	2.4	0.9172
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	3.5	0.9061
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	3.5	0.8881
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	5.2	0.8952
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	6.0	0.8773
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10015007 [exp]	7.3	0.8634
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	7.5	0.9103
AT2G30170			Protein phosphatase 2C family ...		Lus10010968 [exp]	7.5	0.8852
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10028133 [exp]	12.4	0.8708

Compare expression of checked genes

Lus10013029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.