Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05670 331 / 3e-115 signal recognition particle binding (.1.2) AT2G18770 302 / 1e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17060 45 / 9e-06 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 45 / 1e-05 ATARFB1C ADP-ribosylation factor B1C (.1) AT3G62290 42 / 0.0001 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT1G23490 42 / 0.0001 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 42 / 0.0001 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G70490 42 / 0.0001 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT2G47170 42 / 0.0001 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 42 / 0.0001 ATARFA1B ADP-ribosylation factor A1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029130 [exp] 513 / 0 AT5G05670 368 / 2e-129 signal recognition particle binding (.1.2) Lus10030896 [exp] 446 / 6e-160 AT5G05670 350 / 1e-122 signal recognition particle binding (.1.2) Lus10030593 [exp] 438 / 8e-156 AT5G05670 352 / 7e-122 signal recognition particle binding (.1.2) Lus10013024 [exp] 226 / 1e-72 AT2G18770 223 / 2e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009571 [exp] 45 / 1e-05 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10031436 [exp] 42 / 0.0001 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10020392 [exp] 42 / 0.0001 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1) Lus10030884 [exp] 42 / 0.0002 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 42 / 0.0002 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020900 [exp] 371 / 4e-131 AT5G05670 388 / 6e-138 signal recognition particle binding (.1.2) Potri.009G001600 [exp] 217 / 2e-71 AT5G05670 206 / 2e-67 signal recognition particle binding (.1.2) Potri.019G052200 [exp] 46 / 8e-06 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Potri.013G088800 [exp] 45 / 1e-05 AT5G17060 370 / 9e-133 ADP-ribosylation factor B1B (.1) Potri.013G005500 [exp] 42 / 0.0001 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.014G116500 [exp] 42 / 0.0001 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 42 / 0.0001 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 42 / 0.0001 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 42 / 0.0001 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 42 / 0.0001 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF09439 [flax] [poplar] SRPRB Signal recognition particle receptor beta subunit
Representative CDS sequence Show only first row Show all	>Lus10013031 pacid=23149833 polypeptide=Lus10013031 locus=Lus10013031.g ID=Lus10013031.BGIv1.0 annot-version=v1.0 ATGGAAGGGATCGAGCAGTGGAAAAAAGAGGCGGAGCAATGGGCTCAGCAAGGGATCGAGTACGTGCGTCAGGTGCCGGAAGTTCAGCGAGCGATTGAAT ACGCCAGTCAGGTGCCGGCAATTCAACAAGGGATTGAATACGCAAGTCAGATACCTCCTGTTCAGCTCTACTCCGCTGCTGCTGTGCGCCCGAAATCTAA TACGATTGTTTTGTCCGGACTCAGTGGTAGTGGGAAAACCATCCTTTTCTATCAGCTTCGAGATGGCTCGTCACACCTGGGTAGTGTCACCTCAATGGAA CCAAACGTGGGTACTTTCATACTCCATTCTGAAGCTGGCAAGGGGCACAAAGTGAAGCCTGTCCACCTGGTTGATGTTCCTGGGCATGCTCGCCTTCGAC CAAAGCTAGACGAGTTCCTACCTGAAGCAGCCGGCATTGTCTTTGTTGTGGATGCGCTAGAGTTCTTACCTAACCTGCGTGGAGTTTCAGAGTATCTGTA TGATATTCTCACCAAAGCTAGTGTGGTAAAGAAGAAGGTCCCTGTCTTGATTTGCTGCAACAAAACCGAGAAGGTGACTGCACATACCAAGGATTTCATC TGTAAACAGCTCGAAAAAGAGATCGACAAGCTGCGAGCATCGAGAAGCGCTGTTTCGGACGCTGATGTGGCAAACGACCACACACTCGGTACGCCAGGGA AAGCTTTCTCATTCTCCCAGTGCACTAACAAAGTCTCAATTGGCGAAGCTTCCGGCTTGACTGGCAAGATGACCGATGTCGAACAGTTCATCAGGGAACA TGTAAAGCCTTAG
AA sequence Show only first row Show all	>Lus10013031 pacid=23149833 polypeptide=Lus10013031 locus=Lus10013031.g ID=Lus10013031.BGIv1.0 annot-version=v1.0 MEGIEQWKKEAEQWAQQGIEYVRQVPEVQRAIEYASQVPAIQQGIEYASQIPPVQLYSAAAVRPKSNTIVLSGLSGSGKTILFYQLRDGSSHLGSVTSME PNVGTFILHSEAGKGHKVKPVHLVDVPGHARLRPKLDEFLPEAAGIVFVVDALEFLPNLRGVSEYLYDILTKASVVKKKVPVLICCNKTEKVTAHTKDFI CKQLEKEIDKLRASRSAVSDADVANDHTLGTPGKAFSFSQCTNKVSIGEASGLTGKMTDVEQFIREHVKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05670			signal recognition particle bi...		Lus10013031 [exp]	0	1
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	1.4	0.9057
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023908 [exp]	1.4	0.9128
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	3.5	0.8775
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	5.2	0.9010
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	5.3	0.8624
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	5.5	0.8666
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	6.7	0.8862
AT1G73350			unknown protein		Lus10026363 [exp]	8.5	0.8656
					Lus10018566 [exp]	9.8	0.8556
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	10.6	0.8917

Compare expression of checked genes

Lus10013031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.