Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60810 766 / 0 ACLA-2 ATP-citrate lyase A-2 (.1) AT1G10670 764 / 0 ACLA-1 ATP-citrate lyase A-1 (.1.2.3.4) AT1G09430 736 / 0 ACLA-3 ATP-citrate lyase A-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030897 [exp] 823 / 0 AT1G60810 761 / 0.0 ATP-citrate lyase A-2 (.1) Lus10030592 [exp] 762 / 0 AT1G60810 709 / 0.0 ATP-citrate lyase A-2 (.1) Lus10029129 [exp] 728 / 0 AT1G60810 627 / 0.0 ATP-citrate lyase A-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G188900 [exp] 800 / 0 AT1G60810 725 / 0.0 ATP-citrate lyase A-2 (.1) Potri.010G042700 [exp] 767 / 0 AT1G10670 716 / 0.0 ATP-citrate lyase A-1 (.1.2.3.4) Potri.005G004900 [exp] 752 / 0 AT1G09430 795 / 0.0 ATP-citrate lyase A-3 (.1) Potri.013G004400 [exp] 749 / 0 AT1G09430 790 / 0.0 ATP-citrate lyase A-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF08442 [flax] [poplar] ATP-grasp_2 ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10013032 pacid=23149834 polypeptide=Lus10013032 locus=Lus10013032.g ID=Lus10013032.BGIv1.0 annot-version=v1.0 ATGGCGCGCAAGAAGATCAGAGAGTACGACTCCAAGAGACTCCTCAGGGAGCATTTCAAAAGGCTCTCCGGCTCCGATCTGCCCATCAAATCCGCCCAAG TTAAGGAATCGACTGATGTGATGGAGCTAGCGGAGAAGGAAGAACCATGGCTGATGTCAGGGAAGCTGGTGGTGAAACCGGACATGTTGTTCGGAAAACG TGGGAAGAGTGGGTTGGTGGCTTTGAATCTGGATCTGGCTCAAGTTGCTTCCTTTGTGAAAGATAGGCTTGGGAAAGAAGTGGAGATGGGTGGATGCAAA GGACCTATAACTACTTTCATTGTCGAGCCATTCATTCCTCACGATCAGGAGTTTTACCTCAACATTGTCTCCGAGAGGCTTGGATGCACCGTTAGCTTCT CTGAGTGTGGTGGGATTGACATTGAGGAGAATTGGGATAAGGTTAAGACTATCTTTGTCCCAACTGGGGAGTCCTGGACTTCAGAGATCTGTGCTCCTCT TATTGCTACATTGCCTTTGGAGATTCGAGGCGAGATCGACCGGTTTATTTCAGTAGTGTATGCACTATTCCAAGATCTTGACTTTACTTTCCTTGAGATG AATCCTTTCACTCTGGTGGATGGAAAGCCTTATCCTTTGGATATGAGGGGAGAGCTGGATGACACTGCTGCTTTCAAGAACTTCAAGAAGTGGGGGAACA TCGAATTCCCGTTGCCATTCGGGAGAGTGATGAGCGACACCGAAAGCTTCATCCACGGACTGGACGAGAAGACAAGTGCATCTTTGAAATTCACCGTTCT GAACCCCAAGGGACGGATCTGGACCATGGTGGCCGGAGGGGGTGCCAGTGTGATCTACGCAGACACGGTTGGAGATCTTGGCTATGCTTCAGAGCTTGGA AACTACGCGGAGTACAGCGGAGCTCCTAACGAAGACGAAGTTCTTCAGTATGCCAGAATTGTGATTGATTGTGCAACGTCTAATCCTGATGGCCGGAAGA GGGCCCTTGTAGTTGGAGGAGGGATTGCAAACTTCACCGATGTTGCTGCCACATTCAATGGCATAATCCGAGCTATGAAGGAGAAGGAATCCAAGCTGAA AGCTGCTAGGATGCACATATATGTAAGAAGAGGAGGACCAAACTACCAGAAGGGACTTGCTAGGATGAGGGCACTCGGGGAAGAAATCGGCATCCCCATT GAGGTGTACGGGCCGGAAGCAACCATGACTGGAATCTGCAAGCAGGCTATTGAGTGCATATCTGTTGCTGCATAA
AA sequence Show only first row Show all	>Lus10013032 pacid=23149834 polypeptide=Lus10013032 locus=Lus10013032.g ID=Lus10013032.BGIv1.0 annot-version=v1.0 MARKKIREYDSKRLLREHFKRLSGSDLPIKSAQVKESTDVMELAEKEEPWLMSGKLVVKPDMLFGKRGKSGLVALNLDLAQVASFVKDRLGKEVEMGGCK GPITTFIVEPFIPHDQEFYLNIVSERLGCTVSFSECGGIDIEENWDKVKTIFVPTGESWTSEICAPLIATLPLEIRGEIDRFISVVYALFQDLDFTFLEM NPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSDTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELG NYAEYSGAPNEDEVLQYARIVIDCATSNPDGRKRALVVGGGIANFTDVAATFNGIIRAMKEKESKLKAARMHIYVRRGGPNYQKGLARMRALGEEIGIPI EVYGPEATMTGICKQAIECISVAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	0	1
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	1.4	0.9137
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	2.8	0.9097
AT4G04040		MEE51	maternal effect embryo arrest ...		Lus10037972 [exp]	4.0	0.9006
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	6.5	0.9063
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	6.7	0.8982
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	8.5	0.8959
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	9.5	0.8917
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	11.0	0.8764
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	11.7	0.8887
AT1G20950			Phosphofructokinase family pro...		Lus10025167 [exp]	11.7	0.8707

Compare expression of checked genes

Lus10013032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.