Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23390 226 / 2e-72 Kelch repeat-containing F-box family protein (.1) AT3G24760 61 / 9e-11 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029128 [exp] 281 / 6e-97 AT1G23390 142 / 1e-42 Kelch repeat-containing F-box family protein (.1) Lus10029127 [exp] 69 / 5e-14 AT1G23390 66 / 1e-12 Kelch repeat-containing F-box family protein (.1) Lus10025938 [exp] 53 / 6e-08 AT3G24760 381 / 2e-131 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042900 [exp] 268 / 1e-88 AT1G23390 248 / 2e-78 Kelch repeat-containing F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013033 pacid=23149813 polypeptide=Lus10013033 locus=Lus10013033.g ID=Lus10013033.BGIv1.0 annot-version=v1.0 ATGGCGACTCAGAATCATAACTCATCGCCGGCGCCCGACGAGGAAGCTCCTATTTACGGCGACATCCTGAACTCGGTCCTAACCCACGTCCATTTAATCC ACCTCTTACCGGCATCACAAGTCTCCCGCTCATGGAACGGCGCCGTTTCCACCTCCCTCCGCCGTTTCAACAAGCCCAAGCCCTGGCTTATCCTCCACAC CCAGAACACCCGGTCCCCGTATCCGACAACCGCCCACGCATTCGACCCGCGGTGCCGGGTCTGGGTCGAGATCCACAAACCCGCTATTAATTACGTCTCT GCCCTCCGCTCCGCTCACTCCTCCTTGCTCTACATGCTCTCCCCTGCCAAATTCTCCTTCTCCTTCGACCCGCTCCACCGCACGTGGGAGCACGTCAACG CCCCGATCATGTGGCGGACGGATCCGATCGTCGGGAAGGTCGGGAAGTGGATCGTAATCGCAGGTGGAACCTGCGATTTCGAAGACGATCCTTTGGCTGT CGAGATGTACGACGTTGAGGCACGCGCTTGGCGCGCGTGCGATTCCATGCCCGCGATTTTTAAGGACTCCGCCGCGTCCACGTGGCTGACGATCGCTGTC GGAGAAGATAGGCTGTATGTGGCGGAGAGGAGTACCGGAGTCGGGTACGGGTTCCAGCCCGATACAGCGATATGGAGCGGGCCGTATGACGTATGCCCCC GTGGCGGAGGAGGACGGTGA
AA sequence Show only first row Show all	>Lus10013033 pacid=23149813 polypeptide=Lus10013033 locus=Lus10013033.g ID=Lus10013033.BGIv1.0 annot-version=v1.0 MATQNHNSSPAPDEEAPIYGDILNSVLTHVHLIHLLPASQVSRSWNGAVSTSLRRFNKPKPWLILHTQNTRSPYPTTAHAFDPRCRVWVEIHKPAINYVS ALRSAHSSLLYMLSPAKFSFSFDPLHRTWEHVNAPIMWRTDPIVGKVGKWIVIAGGTCDFEDDPLAVEMYDVEARAWRACDSMPAIFKDSAASTWLTIAV GEDRLYVAERSTGVGYGFQPDTAIWSGPYDVCPRGGGGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23390			Kelch repeat-containing F-box ...		Lus10013033 [exp]	0	1
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	1.7	0.9684
AT5G02090			unknown protein		Lus10010878 [exp]	3.0	0.9647
AT3G12955			SAUR-like auxin-responsive pro...		Lus10031790 [exp]	3.5	0.9525
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	6.3	0.9669
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10038913 [exp]	8.1	0.9525
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	9.2	0.9593
AT1G05310			Pectin lyase-like superfamily ...		Lus10010470 [exp]	13.7	0.9522
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10028595 [exp]	14.8	0.9191
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	15.0	0.9519
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10018899 [exp]	15.4	0.9262

Compare expression of checked genes

Lus10013033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.