Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60790 589 / 0 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06700 458 / 1e-155 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 443 / 2e-150 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G49340 415 / 8e-141 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT3G62390 387 / 2e-129 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G20590 382 / 2e-127 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G19160 340 / 1e-111 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 337 / 4e-110 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11570 290 / 2e-92 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 285 / 3e-91 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029126 [exp] 957 / 0 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10021066 [exp] 449 / 5e-152 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10030900 [exp] 408 / 3e-141 AT1G60790 371 / 2e-127 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 390 / 3e-131 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 387 / 2e-129 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10037726 [exp] 379 / 8e-127 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10002430 [exp] 371 / 5e-123 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034041 [exp] 327 / 3e-106 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10030899 [exp] 318 / 2e-105 AT1G60790 227 / 1e-70 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043300 [exp] 664 / 0 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 459 / 2e-155 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 448 / 2e-151 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.T171301 [exp] 432 / 2e-147 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 432 / 3e-147 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.001G010900 [exp] 428 / 1e-144 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 407 / 2e-137 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 408 / 3e-137 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 394 / 4e-131 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 329 / 2e-107 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10013035 pacid=23149828 polypeptide=Lus10013035 locus=Lus10013035.g ID=Lus10013035.BGIv1.0 annot-version=v1.0 ATGGTGGGTCAAGCTATGGACGCGAAGAAATTCGGATTACCAGAGCAACTCCATCTCTCCCCAACGAAGAAGCTCCTCTCCGGGTTCACTCTCTGGATCG CCAGCGCCTTCTTCCTCGTTGCATCGGTGCTCCTCCTCAGCAACACCACCAAAGGTCGCGTCGTGTTCCAAGGGTTTAACAAAATCGGTGTGAATTCATC TCTCGCTTCTTCTTGGCCATTCTCGCTTCCTGATTCTTACTACCCTGCTAGAGAAAGGAGCAACAACGTTTCCGCAGCTGCGTTTGGGGTTGTTTTGGGG AAAATGAATCTAGGAAATTCGAGTGAAGAAGGCGGGAGTTGGGATGGGATTCGAGATGATCTAACAAGTGTTCGACGAAATGACTCAGTGACTGGAAAAA GCGAGAATCTGACTGATTCGGTTGGGGTTTCGGCCAATGGAAGCTTGCCGGTTGGAGAACCAGACTCTTCTGAGATTTCTGTTAAAGCTAATTTGACTGG TGCAGGGAAATTGGTTGCTACTAGTAACGAAAAGGAAGCTAACTTGTCCGGTAGTGGGATTGCAGAGGCGAGGAAGCAAACAACGGAAGCTTCTTACGAG AACTGTGATGTATTTGATGGAAGGTGGGAGTGGGATGACTCCAAGCCTTATTATCCAGCAGGATCTTGTCCTCATATCGATAGGGATTTCAACTGTCATG ATAATGGAAGGCCTGATTCTGGATTTGTTAAATGGAGGTGGCAGCCAAATGGGTGCAACATACCCAGGTTGAATGCCACCGATTTTCTAGAGAGATTAAG AGGGAAGAAGCTGGTTTTCGTGGGGGATTCTCTGAACAGAAACATGTGGGAATCCTTGGTGTGTATACTCCGTCATAGTATCAAGAACAAGAAGAGAGTT TATGAGATATCAGGAAGGAGAGAGTTTAAAAAGAAAGGTTTCTATGCCTTCTTGTTCGCGGCAAGTCTCGACTATAACTGTACAGTTGATTTCGTCGGCT CTCCTTTCCTTGTAAGAGAATCGTCGTTCTCCGGTGCAAATGATACATTCGAGACGTTAAGGTTGGATTTGATGGACAAGACGACTTCAATGTACCATGA CGCCGATGTTTTAGTTTTCAACACCGGTCACTGGTGGACTCACGAGAAGACTTCTAAAGGAGAAGACTACTACCAGGAAGGTAATCATGTCCATGCAAGG CTCAAAGTGTTAGACGCATATAAGAGAGCACTCAAAACATGGGCTAGATGGGTCGATAGGAGCATAGACAGTAGCAGAACTCATGTCTTCTTCAGAGGCT ACTCAGTAACCCATTTCAAAGGTGGCCAATGGAACTCAGGAGGCCAATGCCACAGAGAAACGGAACCCATCTTCAACAGAACCTACTTATCCAAGTACCC GTCGAAGATGAAGATCCTGGAGAACGTACTTCACAAGATGAAAACTCCAGTCACTTATCTAAACATTAGCAGACTCACGGATCACAGAAAAGACGGGCAC CCTTCAATCTACAGAATGAAGTATAAAACTACCGCCGAACGTGCCGCAGCTGAACGAGCTCAGGATTGTAGCCACTGGTGCCTTCCAGGAGTCCCAGATA CTTGGAACGAACTCCTCTATGCCTCGTTCGTAAAGCCTGGGATTGGATCCTGGAAGAAATGA
AA sequence Show only first row Show all	>Lus10013035 pacid=23149828 polypeptide=Lus10013035 locus=Lus10013035.g ID=Lus10013035.BGIv1.0 annot-version=v1.0 MVGQAMDAKKFGLPEQLHLSPTKKLLSGFTLWIASAFFLVASVLLLSNTTKGRVVFQGFNKIGVNSSLASSWPFSLPDSYYPARERSNNVSAAAFGVVLG KMNLGNSSEEGGSWDGIRDDLTSVRRNDSVTGKSENLTDSVGVSANGSLPVGEPDSSEISVKANLTGAGKLVATSNEKEANLSGSGIAEARKQTTEASYE NCDVFDGRWEWDDSKPYYPAGSCPHIDRDFNCHDNGRPDSGFVKWRWQPNGCNIPRLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRHSIKNKKRV YEISGRREFKKKGFYAFLFAASLDYNCTVDFVGSPFLVRESSFSGANDTFETLRLDLMDKTTSMYHDADVLVFNTGHWWTHEKTSKGEDYYQEGNHVHAR LKVLDAYKRALKTWARWVDRSIDSSRTHVFFRGYSVTHFKGGQWNSGGQCHRETEPIFNRTYLSKYPSKMKILENVLHKMKTPVTYLNISRLTDHRKDGH PSIYRMKYKTTAERAAAERAQDCSHWCLPGVPDTWNELLYASFVKPGIGSWKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10013035 [exp]	0	1
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	2.4	0.8317
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10001615 [exp]	3.5	0.7851
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	10.3	0.8194
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Lus10001803 [exp]	11.0	0.7613
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	13.6	0.7837
AT3G52240			unknown protein		Lus10043425 [exp]	15.2	0.7354
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10038355 [exp]	16.4	0.7933
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	17.3	0.7657
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10026548 [exp]	17.7	0.7703
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036109 [exp]	18.0	0.7306

Compare expression of checked genes

Lus10013035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.