Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23380 392 / 3e-137 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G70510 358 / 5e-124 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT4G08150 231 / 3e-73 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 224 / 8e-71 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT1G62990 121 / 3e-32 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT5G11060 117 / 5e-30 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT5G25220 116 / 3e-29 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT4G32040 114 / 1e-28 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G75430 65 / 7e-12 HD BLH11 BEL1-like homeodomain 11 (.1) AT2G27220 66 / 1e-11 HD BLH5 BEL1-like homeodomain 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029125 [exp] 605 / 0 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 205 / 3e-63 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2) Lus10030003 [exp] 202 / 6e-62 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10028244 [exp] 197 / 7e-61 AT4G08150 370 / 1e-127 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10007245 [exp] 140 / 6e-41 AT4G08150 250 / 3e-83 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10042102 [exp] 116 / 1e-31 AT1G23380 155 / 3e-47 KNOTTED1-like homeobox gene 6 (.1.2) Lus10042103 [exp] 113 / 1e-30 AT1G70510 125 / 1e-35 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) Lus10006291 [exp] 108 / 2e-26 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001941 [exp] 108 / 2e-26 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043500 [exp] 445 / 2e-158 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 440 / 2e-156 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.015G079100 [exp] 327 / 2e-111 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.012G087100 [exp] 325 / 1e-110 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 269 / 6e-89 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 266 / 1e-87 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.002G113300 [exp] 239 / 2e-76 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.011G011101 [exp] 227 / 7e-72 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 227 / 9e-72 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.004G004700 [exp] 211 / 1e-65 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03790 [flax] [poplar] KNOX1 KNOX1 domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain CL0123 [flax] [poplar] PF03791 [flax] [poplar] KNOX2 KNOX2 domain
Representative CDS sequence Show only first row Show all	>Lus10013037 pacid=23149824 polypeptide=Lus10013037 locus=Lus10013037.g ID=Lus10013037.BGIv1.0 annot-version=v1.0 ATGGATGGAATGTACGGTTTACACTCGACGACGGCGGAGTACTCGGATAAGGCCTTGATGTCGCCGGAGAATCTCATCCTCCCTTCCGATTACCAGAGCT TCCTCGCCTCCACCGACTCCTTCCGCGATCGCAACCACCATAGCAGCAGCACTCCCAGCGGAATCCCTATCTTCGGATCCGACGAGCTGTCAGTGATTTC GTCGGAGGCTGCTTCCATTACTCATCATCATCGGGAGGAAGACTTCACATCTCTAATCAAGGCGAAAATCGCCTCGCATCCTTCGTATCCTCGGTTGTTG GACGCTTATATCGACTGCCAGAAGGTAGGAGCGCCACCGGAGATCGCGAGTTTTCTAGACGAAATCCGCCGCGAGAACGATGTTTGCAGGAGAGACGCCG GCTCTTGCTTCGGACCTGATCCTGAGCTCGACGAGTTCATGGAAACGTACTGCGACGTGTTGGTGAAATACAAATCAGATCTGGAGCGGCCGTTCGATGA GGCGACGAGCTTCTTGAACAACATCGAAATTCAGCTGCGTAATCTTTGCACTGGCGCCTCAATTCGAAGAAGCTTATCCGACGAAGGTGCAGTATCGTCC GAGGATGAAGTGAGCGGAGGAGAAGCTGACGGGCTCGAAGCTCAACCGAGCAGCGAAGACCGGGACCTTAAGGACAGACTTCTACGGAGGTTCGGAAGCC ACATCAGCTCACTGAAACTGGAGTTCTCAAAGAATAAGAAGAAAGGGAAGCTACCAAAGGAAGCCAGGCAGACCTTACTCGAGTGGTGGAATGTTCACTA CAAATGGCCCTATCCCACTGAGGCTGATAAGATAGCGTTGGCGGAATCGACAGGGCTGGATCAGAAGCAGATAAACAACTGGTTCATAAACCAACGAAAG CGGCATTGGAAGCCATCGGAGAACATGCAGTTCGGGCTCATGGACAGCCTCTCTGGCCAGTTCTATACAGATGACTAA
AA sequence Show only first row Show all	>Lus10013037 pacid=23149824 polypeptide=Lus10013037 locus=Lus10013037.g ID=Lus10013037.BGIv1.0 annot-version=v1.0 MDGMYGLHSTTAEYSDKALMSPENLILPSDYQSFLASTDSFRDRNHHSSSTPSGIPIFGSDELSVISSEAASITHHHREEDFTSLIKAKIASHPSYPRLL DAYIDCQKVGAPPEIASFLDEIRRENDVCRRDAGSCFGPDPELDEFMETYCDVLVKYKSDLERPFDEATSFLNNIEIQLRNLCTGASIRRSLSDEGAVSS EDEVSGGEADGLEAQPSSEDRDLKDRLLRRFGSHISSLKLEFSKNKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKIALAESTGLDQKQINNWFINQRK RHWKPSENMQFGLMDSLSGQFYTDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	0	1
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10027404 [exp]	1.7	0.8705
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	1.7	0.8682
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	4.0	0.8682
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	4.9	0.8563
AT1G76660			unknown protein		Lus10025171 [exp]	5.7	0.8651
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	5.7	0.8433
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	6.5	0.8556
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	7.7	0.8587
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	10.0	0.8436
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001539 [exp]	11.0	0.8350

Compare expression of checked genes

Lus10013037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.