Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23360 369 / 3e-130 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT5G57300 109 / 2e-28 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G41040 61 / 1e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G54400 60 / 2e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G15530 57 / 3e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 57 / 4e-09 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73600 53 / 6e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 53 / 7e-08 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G64970 49 / 1e-06 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT3G63410 47 / 6e-06 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029124 [exp] 432 / 6e-155 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011441 [exp] 110 / 1e-28 AT5G57300 475 / 2e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10000179 [exp] 83 / 4e-19 AT5G57300 342 / 3e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037553 [exp] 84 / 7e-19 AT5G57300 359 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037890 [exp] 62 / 5e-11 AT5G54400 449 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038599 [exp] 62 / 6e-11 AT5G54400 455 / 8e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 51 / 4e-07 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008815 [exp] 50 / 6e-07 AT2G41040 451 / 9e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 50 / 9e-07 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G188600 [exp] 415 / 2e-148 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.018G088400 [exp] 109 / 2e-28 AT5G57300 470 / 4e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G043601 [exp] 58 / 3e-11 AT1G23360 63 / 9e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.011G128300 [exp] 62 / 7e-11 AT5G54400 450 / 1e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G405200 [exp] 58 / 1e-09 AT5G54400 396 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G047400 [exp] 54 / 5e-08 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G060400 [exp] 53 / 6e-08 AT2G41040 461 / 5e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.018G120000 [exp] 53 / 7e-08 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G039000 [exp] 52 / 1e-07 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G245800 [exp] 51 / 3e-07 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01209 [flax] [poplar] Ubie_methyltran ubiE/COQ5 methyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10013038 pacid=23149859 polypeptide=Lus10013038 locus=Lus10013038.g ID=Lus10013038.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTTCAATTCGCATTCTCCTCATTCGCCGTCCGGCCAATCCCCCACCTCCGACGCCCAACGATACGATGCTCCGACGACCGGCAGGCACTCT TTAACCGCATCGCTCCCGTCTACGACAATCTGAATGATTTGCTGAGTTTCGGGCAGCATCGAGTCTGGAAACGGATGGCCATTTCCTGGACTGGAGCTAA GACTGGGGATTCTGTTCTTGATATATGCTGTGGAAGTGGGGACTTGGCTTTTCTCTTGTCCGAGAAAGTGGGTTCTGCTGGCAAGGTAATAGGACTTGAT TTCTCCAAAGAACAGCTGGTTGTTGCTTCATCCCGGCAGAACTCGCGGTGGAAGTCCTGCTATCATAGCATAGAATGGTTAGAAGGCGATGCTACGGATT TGCCATTCTCCGATCGTCAGTTTGATGCCATCACCATGGGGTATGGGCTGAGAAATGTGGTTGACAAAGACAAGGCGATGCGGGAGATGTTCCGAGTGCT GAAACCAGGAGGGAAAGCTTCAATTCTCGACTTCAACAAGACAACCCAACCATTTGTTGCCTCCTTTCAGGGGTGGATGATCGACAATGTTGTTGTTCCC GTGGCTACTGGCTATGGTCTTGCAGACGAGTACGAATACTTGAAGACCTCCATTAGAGAATTCTTGACTGGGAAGGAGCTAGAAGAACTCGCCATGGACG CTGGTTTCTCCAACGCCGCGTATTATGAGATCAGTGGGGGGTTGATGGGGAATCTAGTTGCAACTCGTTAG
AA sequence Show only first row Show all	>Lus10013038 pacid=23149859 polypeptide=Lus10013038 locus=Lus10013038.g ID=Lus10013038.BGIv1.0 annot-version=v1.0 MASLQFAFSSFAVRPIPHLRRPTIRCSDDRQALFNRIAPVYDNLNDLLSFGQHRVWKRMAISWTGAKTGDSVLDICCGSGDLAFLLSEKVGSAGKVIGLD FSKEQLVVASSRQNSRWKSCYHSIEWLEGDATDLPFSDRQFDAITMGYGLRNVVDKDKAMREMFRVLKPGGKASILDFNKTTQPFVASFQGWMIDNVVVP VATGYGLADEYEYLKTSIREFLTGKELEELAMDAGFSNAAYYEISGGLMGNLVATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10013038 [exp]	0	1
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10001450 [exp]	5.7	0.9079
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10013408 [exp]	5.8	0.9056
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10014697 [exp]	10.4	0.8743
AT3G63510			FMN-linked oxidoreductases sup...		Lus10039605 [exp]	11.0	0.8627
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	11.6	0.8954
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	12.4	0.9016
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	14.0	0.8988
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	18.3	0.8878
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10029124 [exp]	23.3	0.8874
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	24.9	0.8712

Compare expression of checked genes

Lus10013038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.