Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70520 426 / 4e-142 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G70530 379 / 9e-124 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT5G40380 370 / 2e-120 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G19090 329 / 5e-105 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT4G23230 249 / 2e-75 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G04540 251 / 6e-75 CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (.1) AT4G23140 249 / 4e-74 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G28670 247 / 1e-73 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT4G21410 248 / 2e-73 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G04570 247 / 3e-73 CRK40 cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029123 [exp] 1025 / 0 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 840 / 0 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 808 / 0 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10013040 [exp] 285 / 1e-87 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10029122 [exp] 284 / 5e-87 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10010960 [exp] 278 / 1e-85 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008764 [exp] 258 / 2e-80 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10038940 [exp] 246 / 2e-75 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007632 [exp] 249 / 1e-73 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043800 [exp] 764 / 0 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 755 / 0 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 292 / 2e-90 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.001G348000 [exp] 287 / 3e-88 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043900 [exp] 281 / 4e-86 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.012G087000 [exp] 274 / 3e-83 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.018G132900 [exp] 254 / 3e-78 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G024632 [exp] 251 / 1e-77 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.006G071300 [exp] 247 / 1e-75 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G024404 [exp] 253 / 4e-75 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10013039 pacid=23149823 polypeptide=Lus10013039 locus=Lus10013039.g ID=Lus10013039.BGIv1.0 annot-version=v1.0 ATGATGATGATCACCATCTTCATCCTCATCCTCCTCCAATGTCAGCAACCAGCAAGATCCGATCCGAGAGCTCAGACAGTAAACGTCACCTGCGACACTG AACTGGAGGCCAACCCGGCAACGTTCGTCCCGAATTTTGTGGCGACAATGGAGAACATCAGCGACCAGATGAGAGTCTCAGGTTTCGGATCGGCGGAAGC AGGGGAACCGGGACCAGACAAGAACTACGGCCTGGCTCAGTGCTACGGCGACCTCTCGTTGCTCAATTGCGTGCTCTGTTACGCCGAGGCGCGCACGATT CTGCCGCAGTGCTACCCTTTCAACGGCGGGAGGATCTTCCTCGACGGGTGCTTCATGAGGGCGGAGAACTACAGCTTCTTCGATCAGTATTCGGGGCCTC AGGACAGAGCCGTCTGCGGAAATGCGACGAATCCTAAGACGAATTTGTCCACGAATGCGTTCCAGAATTCGGTCAGGCAAGGGTTGCAGCAGGCGGTGGC GCATGCGCCTACGAATGGCGGCTTTTGGAGGGGCGAGGTTGGTGTCTGGGGAGGCACGGTGACTTCATCGGTTTTCGTGCTGGCGAATTGCTGGAGGACT CTGAATTCGAGCTCGTGCAGGTCGTGTTTGGAGAACGCTTCGAGTTCTGTGGCCGGTTGCTTGCCGAGGAACGAAGGGAGGGCTTTGAATACCGGGTGTT TCCTGAGGTATTCCGACAAGAATTTCCTGAACGATGTTGCGCGAAATGGAAGTTCCGGAGTGCCGGTTTTCGTGATAGTGGTTTCGGTTGTTAGCTGTGT TCTGGTTCTGGTAGTTGGTGGAGCCATTGGAGGCTACATTTGGAAGCATAGATACATAGAGAAGAAGAGAAGAGGAGTGAATAGTCTGTTCTTCAACAAC AAACACAGAGTTGCCGATTTCTTCAACGAGGTCAACATGATTAGCACCGTTGAGCATAAGAACCTCGTCAGGTTGTTAGGTTGCAGCTGTTCTGGTCCGG AGAGCCTCCTAGTGTACGAATTCCTGCACAACAGAAGCCTTGATGCCTACATCTTCGATGCGAACAAGGGAAAGGCAATGACGTGGGACAAGAGGTATGA GGTGATCGTGGGGACAGCAGAAGGTCTGGTGTATCTCCACGAGAATTCGAAAATCAGGATCATCCACAGGGATATCAAGGCCAGCAACATTCTGTTGGAT TCGAGACTTCGAGCTAAGATTGCTGATTTTGGGTTGGCCAGGTCCTTCCAGGAAGATAAGAGTCATATAAGCACAGCCATTGCAGGAACACTTGGATACA TGGCCCCTGAGTATCTGGCTCACGGCCAGTTGACCGAGAAGGCAGATGTTTATAGTTTCGGGGTATTGCTGCTCGAGATCGTCACGGGTAGGCAGAACAA CAGAAGCAAAAGCTCTGAATATACAGACAGCTTAGTCACTTTGATGTGGAGGCAATTCCAGGAGGGAAGCCCGGAAGCACTATACGATCCGAACTTGATG CTGCAGAATCACCACAATCGTAACATAAACGACGATGTTTTAAGAGTTGTCCACGTGGCGCTTTTATGCACCCAAGAGAGTCCATCAATTAGACCTTTGA TGTCCAGTGTGCTGCAGATGCTAACTAGTGAAGAACTGCTGCCTCCACCGACAAATCCACCTTTCATCGACGAGAGGACCATGGAAATGGGCGATGGAGG ATGCGAGGATCCGTCTTTTCCACTCAATATAGGGCTTTCGGAATCGGTTGCAACTGTTGATCACAGTTCTTTCCACCCTAGATGA
AA sequence Show only first row Show all	>Lus10013039 pacid=23149823 polypeptide=Lus10013039 locus=Lus10013039.g ID=Lus10013039.BGIv1.0 annot-version=v1.0 MMMITIFILILLQCQQPARSDPRAQTVNVTCDTELEANPATFVPNFVATMENISDQMRVSGFGSAEAGEPGPDKNYGLAQCYGDLSLLNCVLCYAEARTI LPQCYPFNGGRIFLDGCFMRAENYSFFDQYSGPQDRAVCGNATNPKTNLSTNAFQNSVRQGLQQAVAHAPTNGGFWRGEVGVWGGTVTSSVFVLANCWRT LNSSSCRSCLENASSSVAGCLPRNEGRALNTGCFLRYSDKNFLNDVARNGSSGVPVFVIVVSVVSCVLVLVVGGAIGGYIWKHRYIEKKRRGVNSLFFNN KHRVADFFNEVNMISTVEHKNLVRLLGCSCSGPESLLVYEFLHNRSLDAYIFDANKGKAMTWDKRYEVIVGTAEGLVYLHENSKIRIIHRDIKASNILLD SRLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIVTGRQNNRSKSSEYTDSLVTLMWRQFQEGSPEALYDPNLM LQNHHNRNINDDVLRVVHVALLCTQESPSIRPLMSSVLQMLTSEELLPPPTNPPFIDERTMEMGDGGCEDPSFPLNIGLSESVATVDHSSFHPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	0	1
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	2.2	0.9633
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	3.5	0.9341
AT2G12400			unknown protein		Lus10008028 [exp]	5.5	0.9298
AT5G38700			unknown protein		Lus10002433 [exp]	6.5	0.9343
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	7.0	0.9284
					Lus10006091 [exp]	7.2	0.9313
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	11.0	0.9220
AT3G05170			Phosphoglycerate mutase family...		Lus10015164 [exp]	11.5	0.9183
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	12.8	0.9306
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	12.8	0.8950

Compare expression of checked genes

Lus10013039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.