Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70530 740 / 0 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT5G40380 498 / 5e-169 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G19090 409 / 2e-135 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT1G70520 341 / 2e-108 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G16670 295 / 8e-94 Protein kinase superfamily protein (.1) AT4G38830 295 / 2e-90 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G28670 285 / 3e-87 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT4G23290 284 / 5e-87 CRK21 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) AT3G09010 277 / 6e-87 Protein kinase superfamily protein (.1) AT4G23230 278 / 1e-85 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029122 [exp] 1190 / 0 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10029123 [exp] 455 / 2e-152 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 447 / 9e-150 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 445 / 3e-148 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008764 [exp] 363 / 3e-120 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10038940 [exp] 290 / 5e-92 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026207 [exp] 289 / 2e-91 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10010927 [exp] 292 / 3e-91 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042460 [exp] 288 / 3e-91 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043900 [exp] 856 / 0 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.001G348000 [exp] 517 / 2e-176 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043800 [exp] 445 / 2e-148 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.012G087000 [exp] 385 / 5e-125 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.007G056000 [exp] 377 / 3e-122 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.001G276600 [exp] 363 / 1e-116 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 343 / 4e-109 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.001G438400 [exp] 296 / 4e-94 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.018G132900 [exp] 293 / 1e-92 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G023876 [exp] 300 / 2e-92 AT4G23180 489 / 5e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10013040 pacid=23149865 polypeptide=Lus10013040 locus=Lus10013040.g ID=Lus10013040.BGIv1.0 annot-version=v1.0 ATGGGTTCTTACTTCTGCTTCCGCCATGGCTATCTCCTCGTTTTCCTCTTATTCTTCCCACGCCTCTCCCTCGCCGATCCCCGGGCGACGGAGGCGGCTC TGATCTGCCAGAACAGGACAGCCGCCCCGGAATTCCGGAGGCCCTTCGTCACCAACTTCCTGGCGGCGCTAGACGGCATGAACGCGCTCATCGCCGGCCA GGGATACGCCGCCGTGGTCAACGGCACGGGAAACGCCACCGTCTACGCGTTCGGGGAGTGCATGAAGGACCTTGACGACGACGACTGCAACGTATGTTTC GCCCAGTGCAAGACCCAGATCCTCCGCTGCCTCCCCTTCCAGCGCGGCGTCCGTGGCGGCCGCCTCTTCTTCGACGGCTGCTACTTGAGGTACGACGATT ACAACTTCTTCAATGAGAGCTCCAGTGTACAAGACCGCGTAGTTTGCGCGCTGGGGAATACGAATTTCACCGGCGGAGATTTGGCGGTTTTCGGCGCCAA TGCGATTTCCTTGGTGGGGAATTTAAGCGAACAGGTGGTGGGCAACAATGACGGATTCGCCGTCGGGTCGATTGTTAGCGGAAACGTCTCGGTTTTCGGA TTGGCACAGTGCTGGGAGTTCGTCAGCGGTGGGGATTGCCGGAGCTGTTTGGCGGATGCGGTTGAAATGATCAGAAATTGTACTCCCATGGAAGAAGGTA GAGTTCTGAAAGCTGGATGCTACATGAGATACTCCCCTCAGAGGTTCTACAACATTTCCAGCTCATCGCCGTCTTCTGGAAACGGAGGAGGGAATAAGAA CTTGGCTGTGATCTTGGCTTCAATATTTGCATCTCTGGCTGCTGTGCTGATTGTTACGGCTGTAATTTTAGTTACCAGGAGAAGGATTCGCAAAAGGAGA ACTCAGAGGAAGGAGCTTGGAGCAATGCTACTTACTGTCAACAAATCCAGGCTGAATTACTCGTACGAATCGCTCGAGAGGGCTACGAATTACTTCCACC AATCGAACAAGCTGGGGCAAGGTGGATCGGGGTCGGTTTACAAGGGAGTGCTGGCTGATGGGAAAACAGTGGCTGTAAAGAGGCTGTTCTTCAATACAAG GCAATGGGTGGATCATTTCTTCAATGAAGTGAACTTGATCAGTGGGATTCAACACAAGAATCTTGTTAAGTTGCTTGGTTGCAGCATCACTGGTCCTGAA AGCCTCTTGGTTTACGAATATATCCCGAATCTAAGCCTATATGATTACCTTGACGTGGGTTCAGAAACCAGGAACGACCAGCCATTGACTTGGGAGCGAA GGTTCAATATCATTCTTGGAACAGCAGAAGGTCTAGCCTTTCTTCACGAGGAATCGGAGTTGAGAATCATACATCGAGACATCAAACTAAGCAACATTCT GCTGGACGAGGATTACACTGCGAGGATTGCGGATTTCGGACTTGCTAGAATGTTCCCCGAAGACCAGACTCATATCAGCACAGCAGTTGCAGGCACATTA GGTTACATGGCTCCGGAATACGTGGTTCGAGGCAAGCTGACGGAGAAGGCTGACGTTTACAGCTTTGGAGTGGTGGTGATCGAAGTCGTCACAGGAAGGA AAAACAACTCCTTTTCGAGAAACCCACATTCGATCCTCCAGACAGTGTGGAACTTTTACGGAACTGGCCAACTATATGAAGCAGTTGATCCGGCTCTAAA TGACAATTTTCGGCAAGTGGAAGCTGTCCGATTGCTCGAGATCGGGCTGCTATGCGTGCAGGCTTCTGCAGATCTACGGCCGGCTATGTCACTAGTAGTG AAAATGGTGGTGGGTGATCTTGAAATCCCACTCCCAACACAGCCCCCATTTCTAAACTGTAATCAGCAGCAGAGTAAGGAGTTGGTTAGACCAGCTGGTG CCACTTCTGAGTCGTACAGCCAGTCTTCTGGGAATGACATGACTCAGAGCTGGATTGAACCAAGATGA
AA sequence Show only first row Show all	>Lus10013040 pacid=23149865 polypeptide=Lus10013040 locus=Lus10013040.g ID=Lus10013040.BGIv1.0 annot-version=v1.0 MGSYFCFRHGYLLVFLLFFPRLSLADPRATEAALICQNRTAAPEFRRPFVTNFLAALDGMNALIAGQGYAAVVNGTGNATVYAFGECMKDLDDDDCNVCF AQCKTQILRCLPFQRGVRGGRLFFDGCYLRYDDYNFFNESSSVQDRVVCALGNTNFTGGDLAVFGANAISLVGNLSEQVVGNNDGFAVGSIVSGNVSVFG LAQCWEFVSGGDCRSCLADAVEMIRNCTPMEEGRVLKAGCYMRYSPQRFYNISSSSPSSGNGGGNKNLAVILASIFASLAAVLIVTAVILVTRRRIRKRR TQRKELGAMLLTVNKSRLNYSYESLERATNYFHQSNKLGQGGSGSVYKGVLADGKTVAVKRLFFNTRQWVDHFFNEVNLISGIQHKNLVKLLGCSITGPE SLLVYEYIPNLSLYDYLDVGSETRNDQPLTWERRFNIILGTAEGLAFLHEESELRIIHRDIKLSNILLDEDYTARIADFGLARMFPEDQTHISTAVAGTL GYMAPEYVVRGKLTEKADVYSFGVVVIEVVTGRKNNSFSRNPHSILQTVWNFYGTGQLYEAVDPALNDNFRQVEAVRLLEIGLLCVQASADLRPAMSLVV KMVVGDLEIPLPTQPPFLNCNQQQSKELVRPAGATSESYSQSSGNDMTQSWIEPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10013040 [exp]	0	1
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10016674 [exp]	2.0	0.8921
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	4.2	0.8744
AT4G00350			MATE efflux family protein (.1...		Lus10014760 [exp]	5.7	0.8859
AT1G48590			Calcium-dependent lipid-bindin...		Lus10042002 [exp]	11.8	0.8438
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	12.2	0.8656
AT3G26000			Ribonuclease inhibitor (.1)		Lus10037060 [exp]	14.7	0.7781
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10037447 [exp]	19.0	0.8000
AT1G31130			unknown protein		Lus10028643 [exp]	20.7	0.8713
AT2G26800			Aldolase superfamily protein (...		Lus10026823 [exp]	29.7	0.8613
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	33.5	0.8153

Compare expression of checked genes

Lus10013040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.