Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12940 566 / 0 ATNRT2.5 nitrate transporter2.5 (.1) AT1G08090 495 / 1e-171 LIN1, ACH1, NRT2;1AT, ATNRT2:1 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) AT5G60770 490 / 6e-170 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) AT3G45060 490 / 1e-169 ATNRT2.6 ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1) AT5G60780 484 / 2e-167 ATNRT2.3 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1) AT1G08100 479 / 1e-165 NRT2;2AT, ACH2, ATNRT2.2 nitrate transporter 2.2 (.1) AT5G14570 418 / 5e-142 ATNRT2.7 high affinity nitrate transporter 2.7 (.1) AT4G14358 52 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030902 [exp] 653 / 0 AT1G12940 751 / 0.0 nitrate transporter2.5 (.1) Lus10030588 [exp] 642 / 0 AT1G12940 737 / 0.0 nitrate transporter2.5 (.1) Lus10026527 [exp] 473 / 4e-163 AT5G60770 759 / 0.0 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10016121 [exp] 345 / 1e-114 AT1G08090 583 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10008767 [exp] 324 / 5e-106 AT5G14570 483 / 1e-168 high affinity nitrate transporter 2.7 (.1) Lus10016120 [exp] 294 / 1e-95 AT1G08090 533 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10025421 [exp] 237 / 6e-76 ND 193 / 1e-59 Lus10021444 [exp] 189 / 6e-56 AT5G60770 307 / 1e-101 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10016119 [exp] 146 / 9e-42 AT5G60770 177 / 4e-54 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081300 [exp] 647 / 0 AT1G12940 698 / 0.0 nitrate transporter2.5 (.1) Potri.T124708 [exp] 645 / 0 AT1G12940 684 / 0.0 nitrate transporter2.5 (.1) Potri.T124608 [exp] 642 / 0 AT1G12940 688 / 0.0 nitrate transporter2.5 (.1) Potri.012G087700 [exp] 598 / 0 AT1G12940 640 / 0.0 nitrate transporter2.5 (.1) Potri.009G008500 [exp] 505 / 1e-175 AT1G08090 830 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.009G008600 [exp] 504 / 4e-175 AT1G08090 832 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.001G348300 [exp] 468 / 8e-162 AT5G14570 509 / 1e-178 high affinity nitrate transporter 2.7 (.1) Potri.004G213716 [exp] 77 / 1e-17 AT1G08090 105 / 1e-28 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10013042 pacid=23149878 polypeptide=Lus10013042 locus=Lus10013042.g ID=Lus10013042.BGIv1.0 annot-version=v1.0 ATGGAAATGGCATCAACCGATTCATCATCAACAACCATGGATCAGAACCAAATCCAAAACCGAAACCCAGCTCCCAAATTCGCTCTCCCAGTAGACTCAG AGCACAAATCCACCAAATTCCCAGTCTTCTCCTTCGCATCCCCACACATGCGAGCATTCCACCTCTCATGGCTGTCCTTCTTCGCCTGCTTCGTCTCCAC ATTCGCCGCCGCGCCATTACTCCCCGTAATCCGAGACGACCTCGACCTGACATCCACCGACATCGGAAACGCAGGAATCGCCTCCGTCGCCGGAGCAGTT CTCGCCCGCCTCGCCATCGGCACCGCCTGTGACCTCTTCGGCCCCCGACTTGCCTCCGCCTCCTTAATCCTCCTCTGTTCCCCCGCCGTCTTCTGTACAG CCATGGCTTCCTCCCCTGCTTCCTTCCTCATACTCAGATTCTTCACGGGCTTCTCTCTCTCCACCTTCGTCTCCACCCAGTTCTGGATGAGCTCATTGTT CTCATCTGACATCTCCGCCACCGCCAACGCCGTCGCCGCCGGTTGGGGCAACCTTGGTGGCGGCGCCGCCCAGCTCCTCATGCCCTTCTCATTCAACCTA ATCCACCGATGGACGACCAAATTCACCGCATGGAGAATTTCCTTCTTCGTTCCGGCACTCTTCCAGACATTCACCGCCTTCGCGGTTTTGATCTTCGGCC AGGACTCCCCCGACGGCAACTTCCGGCAGCTGGAAAAAGGTAAAAAAGCAGAGGACTCAATTTCCAACGTTCTGTACCACGGGATCACGAATTACAGAGG ATGGATTCTGGGTTTGACTTACGGATTCTGCTTCGGAGTGGAACTAACAATCGACAACATAATCGCGGAGTATTTCCACGATCAATTCAACCTGGATTTA AAAACAGCCGGAATAATCGCCGGCAGCTTCGGTTTCATGAATCTCGTATCCCGCCCGGCCGGCGGGATGCTATCCGACAAGGTTTCCAATAATTTCGGGA TGAAAGGACGGCTATTTACGCTCTGGGTCGTTCAAACATCAGGAGGAATCCTCTGTATAATCCTTGGCAGAGTCAATTCATCAATTTCTGCCTCCATAAC CGTCATGCTCTGTTTTTCCTTCCTCTGCCAAGCTGCTTGCGGGTTGACTTTCGGAATCGTGCCGTTTGTGTCAAGGAGGTCGTTGGGGGTGGTTTCCGGG ATGACTGGAGGCGGCGGGAATGTAGGGGCGGTGGTGACTCAGTTGATGTTTTTCAGAGGTGAAAGATTTAGTAAGGAGATGGGGATTAGTCTGATGGGGG TGGCGATTGTGTGCTGTAGTTTGGCGGTGGGGTTGGTTTACTTTCCGCAGTGGGGTGGGATGTTGTGTACGGCGGTGGAGGATTCGACGGAGGAGGATTA TTATGTGGGTGAGTGGAGCGAGGAGGAGAGGCGGAGAGGGATGCATTGCGGGAGTGTTAAGTTTGCTGGTAACTGCAGGAAGGAACGAGGTGGGAGACAA TTTCGAAATGACCACGTTTCGCCCGCGAATCGAGCAGTGTTTGTTTGA
AA sequence Show only first row Show all	>Lus10013042 pacid=23149878 polypeptide=Lus10013042 locus=Lus10013042.g ID=Lus10013042.BGIv1.0 annot-version=v1.0 MEMASTDSSSTTMDQNQIQNRNPAPKFALPVDSEHKSTKFPVFSFASPHMRAFHLSWLSFFACFVSTFAAAPLLPVIRDDLDLTSTDIGNAGIASVAGAV LARLAIGTACDLFGPRLASASLILLCSPAVFCTAMASSPASFLILRFFTGFSLSTFVSTQFWMSSLFSSDISATANAVAAGWGNLGGGAAQLLMPFSFNL IHRWTTKFTAWRISFFVPALFQTFTAFAVLIFGQDSPDGNFRQLEKGKKAEDSISNVLYHGITNYRGWILGLTYGFCFGVELTIDNIIAEYFHDQFNLDL KTAGIIAGSFGFMNLVSRPAGGMLSDKVSNNFGMKGRLFTLWVVQTSGGILCIILGRVNSSISASITVMLCFSFLCQAACGLTFGIVPFVSRRSLGVVSG MTGGGGNVGAVVTQLMFFRGERFSKEMGISLMGVAIVCCSLAVGLVYFPQWGGMLCTAVEDSTEEDYYVGEWSEEERRRGMHCGSVKFAGNCRKERGGRQ FRNDHVSPANRAVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10013042 [exp]	0	1
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	1.7	0.9294
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	6.2	0.9038
					Lus10022598 [exp]	7.7	0.8948
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	8.8	0.8895
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	10.2	0.8991
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	10.5	0.9008
AT5G49690			UDP-Glycosyltransferase superf...		Lus10028865 [exp]	11.0	0.8711
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	12.2	0.8732
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	12.4	0.8956
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	12.7	0.8829

Compare expression of checked genes

Lus10013042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.