Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029119 [exp] 266 / 1e-91 ND 37 / 0.005
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013043 pacid=23149808 polypeptide=Lus10013043 locus=Lus10013043.g ID=Lus10013043.BGIv1.0 annot-version=v1.0 ATGAAGGTCAACGCCGGCGACTTCTCAACGACGACCTACGTAATCGTCGTCGCGGCAGCTCTCCTTTCCACCCTTCCTCGCCAATCCGCATCCCAAGCGT CGACGGAGGTATGCAAGACGGTAACCCACCGGCAGCTATGCGACGCCTTAGTGAAGGGGTCGCCGGACGCGCTGTCGGCGACGGTGGCGGTGGCCGAGAA GCTGATCCAGATGACCAACCGTGCCAAGTCGCATCTGGAACCCAGCACAGTTCCAAAGACCGATTCGGCCCTGGCATGCATCCAGAATTACAATCTGGCC GTTCAGGATATAAGCCTGGTATTGGCCCGCGTGGAGAAAGACAAGTACACGTTCACTTCCAAGGTCAGTTCGGCCATTTCGCTTTACGGCCAGTGCAACG CTGGCGGGAAATCGTCTACTTCGCAGCTCAGCGAAAGGCTTAGCAATACCGCGAGTACGTCCCTGGAGATTGCTCAGAAGATTCCCTAA
AA sequence Show only first row Show all	>Lus10013043 pacid=23149808 polypeptide=Lus10013043 locus=Lus10013043.g ID=Lus10013043.BGIv1.0 annot-version=v1.0 MKVNAGDFSTTTYVIVVAAALLSTLPRQSASQASTEVCKTVTHRQLCDALVKGSPDALSATVAVAEKLIQMTNRAKSHLEPSTVPKTDSALACIQNYNLA VQDISLVLARVEKDKYTFTSKVSSAISLYGQCNAGGKSSTSQLSERLSNTASTSLEIAQKIP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23350			Plant invertase/pectin methyle...		Lus10013043 [exp]	0	1
					Lus10018846 [exp]	4.4	0.8101
AT5G66660			Protein of unknown function (D...		Lus10018880 [exp]	5.7	0.7618
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10012699 [exp]	6.3	0.6331
AT3G49070			Protein of unknown function (D...		Lus10018879 [exp]	8.7	0.7263
					Lus10039765 [exp]	15.9	0.6226
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023452 [exp]	17.3	0.6434
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012001 [exp]	18.3	0.6402
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	20.9	0.6771
AT2G25270			unknown protein		Lus10014341 [exp]	28.1	0.6031
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034816 [exp]	29.8	0.5783

Compare expression of checked genes

Lus10013043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.