Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17100 124 / 4e-35 SOUL heme-binding family protein (.1) AT1G78460 91 / 2e-22 SOUL heme-binding family protein (.1) AT1G78450 87 / 7e-21 SOUL heme-binding family protein (.1) AT5G20140 54 / 2e-08 SOUL heme-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029117 [exp] 360 / 5e-128 AT1G17100 99 / 3e-25 SOUL heme-binding family protein (.1) Lus10001247 [exp] 163 / 2e-50 AT1G17100 142 / 3e-42 SOUL heme-binding family protein (.1) Lus10042093 [exp] 162 / 7e-50 AT1G17100 143 / 2e-42 SOUL heme-binding family protein (.1) Lus10041532 [exp] 96 / 4e-24 AT1G17100 293 / 3e-101 SOUL heme-binding family protein (.1) Lus10012559 [exp] 97 / 1e-23 AT1G17100 292 / 1e-99 SOUL heme-binding family protein (.1) Lus10017193 [exp] 48 / 1e-06 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044200 [exp] 211 / 5e-69 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1) Potri.015G080000 [exp] 157 / 3e-48 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1) Potri.012G088400 [exp] 147 / 4e-44 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1) Potri.001G379000 [exp] 104 / 2e-27 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) Potri.001G067100 [exp] 81 / 2e-18 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 49 / 6e-07 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.016G109400 [exp] 47 / 1e-06 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10013045 pacid=23149877 polypeptide=Lus10013045 locus=Lus10013045.g ID=Lus10013045.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCTGGTCACACCTACTCTTAGCAACAATCTTTTCCCTAACCATTGCCAATCTCCATCAACTCGGCATCTCTGCAGTCGACTCGCCACAGT ATACAGTGGTTCACTCCGAGCCAGACTACGAAATCAGACTCTACAGAGACATCCAATGGGTTTCATCTCTCGTTCGAGGAACCTCATCCTTCAACACATC TACCAAACTCGGCTTCCACAGGATCTATCAGTACATTCACGGAGCAAACGCAAACTCTACTCAACTACCAATGACTGCACCAGTCGTAACAGCCATTACT CCCGGGCCGCAGCAAGCTTCACTCTACTACTACGTGAAGCTGTTCCTATACAAAGGGAATATTCCAGCCCCGAACCAGGGGCTGGATCTAGAGTTAGAGA AGTGGAAGGCTAGGTGTCTAGCAGTAAGGAAGTTCTCCGGGTTTGCCGGAGACGATAATGTTAAGAAAGAAGTCGATGCTCTTGCGACCAGCCTGAAGAT TAAGCAGTTTTTCGAAGGGGTGGTTAATGGTGAAGATAGTGCTACTATGGTGGGATATAACGGCTCATATGCGGTTGCACAGTACAATGCTTCACGACAC CTAACCGGTCGGGTGAATGAAGTTTGGATCGACCTTACTGATCGTAAGATCGCAGCAGTGTGTAACGTTTAG
AA sequence Show only first row Show all	>Lus10013045 pacid=23149877 polypeptide=Lus10013045 locus=Lus10013045.g ID=Lus10013045.BGIv1.0 annot-version=v1.0 MASLWSHLLLATIFSLTIANLHQLGISAVDSPQYTVVHSEPDYEIRLYRDIQWVSSLVRGTSSFNTSTKLGFHRIYQYIHGANANSTQLPMTAPVVTAIT PGPQQASLYYYVKLFLYKGNIPAPNQGLDLELEKWKARCLAVRKFSGFAGDDNVKKEVDALATSLKIKQFFEGVVNGEDSATMVGYNGSYAVAQYNASRH LTGRVNEVWIDLTDRKIAAVCNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17100			SOUL heme-binding family prote...		Lus10013045 [exp]	0	1
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	5.6	0.9608
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	6.0	0.9595
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	7.7	0.9596
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10015028 [exp]	12.7	0.9533
AT3G53270			Small nuclear RNA activating c...		Lus10008478 [exp]	14.8	0.9118
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	15.0	0.9586
					Lus10018421 [exp]	15.5	0.9559
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	15.7	0.9521
					Lus10002596 [exp]	20.2	0.9515
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10017221 [exp]	21.9	0.9323

Compare expression of checked genes

Lus10013045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.