Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60770 654 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 288 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 263 / 5e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 246 / 1e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 239 / 4e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 239 / 1e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 214 / 2e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 201 / 8e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G09450 149 / 3e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 151 / 2e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029115 [exp] 446 / 2e-156 AT1G60770 335 / 9e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 317 / 1e-102 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004173 [exp] 279 / 5e-89 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 258 / 1e-79 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022033 [exp] 253 / 5e-79 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009787 [exp] 247 / 1e-75 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 246 / 3e-75 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 234 / 4e-71 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 233 / 9e-71 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157400 [exp] 731 / 0 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 731 / 0 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 321 / 2e-104 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G119000 [exp] 305 / 2e-98 AT1G02370 456 / 1e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 260 / 2e-80 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 257 / 9e-80 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 252 / 2e-77 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 249 / 4e-77 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 248 / 1e-76 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 247 / 5e-76 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013047 pacid=23149840 polypeptide=Lus10013047 locus=Lus10013047.g ID=Lus10013047.BGIv1.0 annot-version=v1.0 ATGGCGATGCCACGAATTTCCGGGCGCACAAAAAATATAGCCAACAGGTCGACGAAGTACTTAGACGAAGCTCTGTACCTCCGGCTGTTCAAAGAAGGCG GAGAAGACGTAACAGTCAGGACCCAGCTGAACCAGTTCCTCAAAAGCTCCAAGCGAGTTTACAAATGGGAAGTAGGCGACACCATCAAGAAGCTCCGCAG CCGGAAGCTCTATTATCCCGCTCTCAAGTTATCGGAAGAAATGTCGAGTAGAGGTATGAACAAGACGGTAAGTGATCAAGCGATCCATCTCGATCTACTA GCAAAAGAGCGAGGCATTCGTGCTGCGGAGGATTACTTCATTGATCTGCCCGAGACATCAAAGAGCCAGCTAACATACGGCGCTCTTCTAAACTGTTACT GCAAGGCCTTGATGACCGAAGAATCCGAGGCGCTTTTTGAAAAGATGAAGGAGCTCAATTTCGGGTTGACTTCCATGTCTTACAACAGCCTCATGACGCT TTACGAGAAATCCGGTCAGCGCGAAAAGATCCCCACGATCATACAGGAGATGAAGTCTAATAATGTGATGCCCGACTCGTTTACTTACAACATTTGGATG AGGGCTCTGGCAGCTACGGGTGATATCTCCGGTGTCGATAGAGTTATTGATGAGATGAAGAGAGATGGCCGGGTTGCTGCTGACTGGACTACTTATAGCA ACTTAGCCTCCATTTATGCTGATGCTAAGCTGTTTGATAAAGCAGATAAAGCACTGAAAGAATTGGAGAAGAAGCTCAAAGACTCGAAAAATGTCTCTGC TTTCCAGTACCTAATCACACTGTACGGAAAGACGGGAAATTTGGAAGAAGTTCACCGCATCTGGCGTTCTTTGCGCGTGGCATTTCCGAAAACAGCAAAC ATAAGCTACTTGAATATGATTCAAGTGCTGGTTAACTTGAAAGATTTGCCAGGTGCGGAGAAATGTTTCAGGGAATGGGAAGCTAGCTGCTCGACTTACG ACATCAGAGTAGCAAATGTGCTCATCAAAGCTTATGCTAACGAGGGCTCGCTAGAGAAGGCCGAGAAATTGAAGAACAAGGCCGGGAGAAGGGGTGCCGA GCCCAATGCTAGGACGTGGGAGATATTTTCAGAGTACCATTTCAGGAAAGGAAACATCAAGAGGACGGTTGAGTGTCTGTCCAATGCTATAGAGGTTGGG AAAGGAGATGGTAAGAAATGGGTTCCTTCTGATGAGGTTGTCGCTTCTTTGATGGCACGTTTCGAGCAAGCGGGGAATGTGGAAGGTGCAGAAGGGTTTA TAGAGGTTCTCAAGAAGGGTGGAGAGAAGTTGGGAGCTGAGGTGTTCGAGTCGTTGATTAGGACTTATTCGGGTGCTGGAAGGACGACCAACGTAATGCG CCGTAGATTGAAGATGGAGAATGTGGAGGTGAGCGAGGCTAGCCGGAAGTTGCTTGACGTGATTTGTGTAGAGTAA
AA sequence Show only first row Show all	>Lus10013047 pacid=23149840 polypeptide=Lus10013047 locus=Lus10013047.g ID=Lus10013047.BGIv1.0 annot-version=v1.0 MAMPRISGRTKNIANRSTKYLDEALYLRLFKEGGEDVTVRTQLNQFLKSSKRVYKWEVGDTIKKLRSRKLYYPALKLSEEMSSRGMNKTVSDQAIHLDLL AKERGIRAAEDYFIDLPETSKSQLTYGALLNCYCKALMTEESEALFEKMKELNFGLTSMSYNSLMTLYEKSGQREKIPTIIQEMKSNNVMPDSFTYNIWM RALAATGDISGVDRVIDEMKRDGRVAADWTTYSNLASIYADAKLFDKADKALKELEKKLKDSKNVSAFQYLITLYGKTGNLEEVHRIWRSLRVAFPKTAN ISYLNMIQVLVNLKDLPGAEKCFREWEASCSTYDIRVANVLIKAYANEGSLEKAEKLKNKAGRRGAEPNARTWEIFSEYHFRKGNIKRTVECLSNAIEVG KGDGKKWVPSDEVVASLMARFEQAGNVEGAEGFIEVLKKGGEKLGAEVFESLIRTYSGAGRTTNVMRRRLKMENVEVSEASRKLLDVICVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60770			Tetratricopeptide repeat (TPR)...		Lus10013047 [exp]	0	1
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	1.0	0.8653
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	3.5	0.8296
AT5G27700			Ribosomal protein S21e (.1)		Lus10020645 [exp]	6.7	0.8134
AT1G61570		TIM13	translocase of the inner mitoc...		Lus10017352 [exp]	8.2	0.8124
AT1G71730			unknown protein		Lus10029741 [exp]	9.8	0.7542
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10004648 [exp]	11.3	0.8045
AT5G48760			Ribosomal protein L13 family p...		Lus10022793 [exp]	13.4	0.8091
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	13.9	0.7942
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	14.4	0.7937
AT1G50920			Nucleolar GTP-binding protein ...		Lus10027370 [exp]	14.8	0.7980

Compare expression of checked genes

Lus10013047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.