Plant FIBer expression Database

Lus10013048 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10740 753 / 0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
AT1G23330 704 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029114
[exp]
915 / 0 AT1G10740 778 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030585
[exp]
828 / 0 AT1G10740 766 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030904
[exp]
825 / 0 AT1G10740 763 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030586
[exp]
372 / 1e-128 AT1G10740 356 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044400
[exp]
766 / 0 AT1G10740 719 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.008G187900
[exp]
752 / 0 AT1G10740 709 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.016G114350
[exp]
218 / 4e-70 AT1G10740 203 / 1e-65 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.004G029200
[exp]
204 / 3e-64 AT1G10740 188 / 2e-59 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10013048 pacid=23149862 polypeptide=Lus10013048 locus=Lus10013048.g ID=Lus10013048.BGIv1.0 annot-version=v1.0
ATGAGGGGATGGATATCGGCGGCGCTGCAATTGGCGGAGCTTTTCGTGAGCACGGTGGTCCATATGCTTTACGGCTTCTACATATTCAGCTCCGCCGTCG
CCGGCGATCTCTCCCAGGGTGTTAGCGATTGGTTCTTCAAGCCTAATATGAACATCGTCGTCAAGGACGACCCCTCGGCCGCCGGAAACCGTTCTTCCTC
TGTTGAAGAGCTTCCTCCGATCGTCTTGGTCCACGGGATCTTCGGGTTCGGCAAAGGGAAATTGGGAGGTTTATCGTATTTTGCAGGGGCAGAGAACAAA
GATGAAAGGGTTCTTGTTCCTGATTTGGGCTCTCTAACCAGCATCTACGATAGGGCAAGGGAGTTGTTCTATTATCTGAAAGGTGGCCAGGTTGATTATG
GCGAAGAACACAGCAAATCCTGTGGGCATTCCCAATTCGGAAGGACTTATGAACAAGGGAATTATCCAGAATGGGATGAAGATCATCCGATCCATTTTGT
TGGACATTCTGCTGGAGCTCAGGTTGTTCGAGTTCTGCAGCAAATGCTTGCTGACAAGGCCTTTAAGGGTTATGAGAACACTTCTGAGAATTGGGTGTTG
AGCATCACATCTTTATCAGGAGCCTTCAATGGAACTACTAGGACCTACTTGGATGGAATGCATCCAGAAGATGGGAAGAGCTTGAAACCAATATGCCTGC
TGCAAATCTGCCGCCTTGGAGTGATCGTCTACGACTGGCTCGACATATCCTGGCTCAAGGCTTACTACAATTTTGGGTTCGACCACTTCGATTTGTCGAG
GAAGAAGATGGGGATTGCCGGTCTGGTTGATTGCCTGTTGGGGAATGCTGGTCCGTTTGCTTCAAAGGATTGGATACTGCCTGACTTGACGATTCAAGGG
TCTTTAGAACTCAACTCCCATTTGCAAACGTTCCCCTATACTTACTACTTCAGCTATGCGACAAAGCGGACAAGGAAGATCATGGGCGTTACGGCTCCAT
CCAGCGTTTTTGGTGTCCATCCTATGCTGTTCATCAGAGTTCTGCAGATGAGCCAGTGGCGTCACCCTTCTGATGTCCCTCCTCCTTACAAAGGATACAG
AGATGAAGATTGGCAGGACAATGATGGAGCTCTAAACACCATATCAATGACACACCCTCGCTTCCCGGTTGAGCATCCGAGCCACTTCATTCAAGACGAT
TCCGAGTGCCAGTCTTTGCAGCCCGGAATCTGGTACTATAAAGTAGTGGAAGGAGATCACATACTGTTCATAGTGAACAGGGAAAGAGCAGGAGTGCAGT
TTGATTTGATATACGACAGCATTTTTGAACGATGCAGGAAGCATGTTTTTAAGAGGAATCCACAGTTGTTACCCAATGAAGCTCTACATTAA
AA sequence
>Lus10013048 pacid=23149862 polypeptide=Lus10013048 locus=Lus10013048.g ID=Lus10013048.BGIv1.0 annot-version=v1.0
MRGWISAALQLAELFVSTVVHMLYGFYIFSSAVAGDLSQGVSDWFFKPNMNIVVKDDPSAAGNRSSSVEELPPIVLVHGIFGFGKGKLGGLSYFAGAENK
DERVLVPDLGSLTSIYDRARELFYYLKGGQVDYGEEHSKSCGHSQFGRTYEQGNYPEWDEDHPIHFVGHSAGAQVVRVLQQMLADKAFKGYENTSENWVL
SITSLSGAFNGTTRTYLDGMHPEDGKSLKPICLLQICRLGVIVYDWLDISWLKAYYNFGFDHFDLSRKKMGIAGLVDCLLGNAGPFASKDWILPDLTIQG
SLELNSHLQTFPYTYYFSYATKRTRKIMGVTAPSSVFGVHPMLFIRVLQMSQWRHPSDVPPPYKGYRDEDWQDNDGALNTISMTHPRFPVEHPSHFIQDD
SECQSLQPGIWYYKVVEGDHILFIVNRERAGVQFDLIYDSIFERCRKHVFKRNPQLLPNEALH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10740 alpha/beta-Hydrolases superfam... Lus10013048
[exp]
0 1
Lus10000527
[exp]
8.8 0.9757
AT3G02840 ARM repeat superfamily protein... Lus10040125
[exp]
9.0 0.9788
AT2G46620 P-loop containing nucleoside t... Lus10022362
[exp]
12.1 0.9781
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10034092
[exp]
16.6 0.9780
AT5G49480 ACP1, ATCP1 Ca2+-binding protein 1, Ca2+-b... Lus10017063
[exp]
16.9 0.9762
AT1G35210 unknown protein Lus10010343
[exp]
18.0 0.9769
AT3G54200 Late embryogenesis abundant (L... Lus10032671
[exp]
20.5 0.9736
AT2G37430 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers sup... Lus10024428
[exp]
23.7 0.9683
AT2G43840 UGT74F1 UDP-glycosyltransferase 74 F1 ... Lus10008742
[exp]
24.4 0.9726
AT5G26340 ATSTP13, MSS1, ... SUGAR TRANSPORT PROTEIN 13, Ma... Lus10002450
[exp]
24.5 0.9744

Lus10013048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.