Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68940 830 / 0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G76390 408 / 7e-128 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 404 / 2e-126 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT3G46510 71 / 3e-12 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 66 / 9e-11 PUB15 Plant U-Box 15 (.1) AT5G57035 66 / 1e-10 U-box domain-containing protein kinase family protein (.1) AT4G36550 65 / 2e-10 ARM repeat superfamily protein (.1) AT2G28830 63 / 1e-09 AtPUB12 PLANT U-BOX 12 (.1) AT1G23030 61 / 3e-09 PUB11 ARM repeat superfamily protein (.1) AT1G71020 60 / 8e-09 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029113 [exp] 1349 / 0 AT1G68940 572 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10013216 [exp] 457 / 2e-144 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10029112 [exp] 343 / 1e-110 AT1G68940 214 / 5e-64 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10030734 [exp] 354 / 4e-109 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 173 / 9e-44 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 169 / 2e-42 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 134 / 1e-31 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10034132 [exp] 116 / 3e-26 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 108 / 1e-23 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136500 [exp] 1092 / 0 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.008G112900 [exp] 1070 / 0 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.005G253400 [exp] 491 / 3e-159 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G007800 [exp] 472 / 6e-152 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 138 / 7e-33 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 138 / 7e-33 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G175800 [exp] 129 / 4e-30 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 122 / 6e-28 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 119 / 4e-27 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.001G024600 [exp] 107 / 3e-23 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10013050 pacid=23149876 polypeptide=Lus10013050 locus=Lus10013050.g ID=Lus10013050.BGIv1.0 annot-version=v1.0 ATGAGCTCACTCTTACCACAAGAAGAAACAGAGGAGGATGAAGAAGCAGAGGAAGGGGAAGAAGTCCACCAGCTCAGGAAAGATGAACACCAGGTAGCAG ACGCAACAGCCAGGTCAAGGTCGATGTCGCTCGACGAGGATCAGCTCCTGATTGATGCTATCGTTGAATCCTTGCTGGCATCAACTTCCGACATCATGGA ATCAGTGCCATACATAGAATCAGAACAGGAGATCTTCTACGAAACTGGATGCTACGTATACCGCACTTCTTTTGCAGTGATGGAGTTGCAGACAACGGAG AATCCTCCGGAGAATGCCAAGGAGATCCTGGAATCTCTTTCCAGGAGCGTCAACCAAGCCAGGAATCTTATTAGCAGGTGCAGGAGTGATGAGAAAGATT CGATTTCTGACTCCGAGCTGAGAAACATCCTGTTGCCTCAGCTCGAGGGTGCGATCAAATCCGCTGGCGAGATCTTGAGTAACATCCCTTCATCGACATA TACAGACCATAAATATGCAGAAATGGCAGTCAGGTCCATTGCCAGCGAGATGCAGAACGCTCAGTTCAAGGTCAGTCCAATTTTGCACAAAGAGTCAGAA GAAGCCATAGAATCAGACCTCTACCCTATCAAAGTTGAATTTCCCAGAGAGAACTCCTGGAAAGTATCGAACTTTCCGCAGTTGCATCAGTTCCTGAGAC CGACAAGTACTACCACGAGCCAAGGGAACCGATATTATTACAATAGCGCATCCGGATCATCGTTTCCTGAGATGGCTAATCACATTGAGCCTCTATACGA TACCTTCTGCTGTCCATTAACAAAACAGGTCATGGAAGATCCTGTCACGATTCAAAGCGGACTCACGTTCGAAAGAAAAGCGATTGCGATGTGGTTCCAG GAGTTCGAGAACTTGCCTGAAGTTTTCTGTCCGATCACGGAGATGAAACTGACAAGTAGAGTCCTGACGACTAACGTTGCCTTGCGGACCACAATCGAGG AATGGAAAGAACGAAACGAGGCTGCGAAGATCAAGGTCTGCCGAGCTGCGTTGTCCTTAGCTAGTACAGCAAGCATGGCGATCGAAGCAGTGAAGGATTT GCAGGGAATCTGCAGTAGGAAGAAATACAATAAGATGCAAGTTTGTAATGCAGGCATTCTTCCATTGCTTTCGAAATTCCTGAGTCATAACGACCGGGAT GTTCGAAGAAATGATTGCGGATCGGTCGATTTGTCGACAGTGGTGAAACTCCTATTGAGCGGCCACCAGGTTATCAAACATGAAGCATTGCTCTTGTCGC TTGAGCTTGCAAGATTGGGGTCGCTGTGCAAGAGAATCGGATCAATTACCGGATCAATTCTGATGCTTATCAGACTCAAGTACAGCCATTCGCTCGATTC GTTTGCATCGGAGAAGGCGGACGAAATCCTGAAGTGCCTTGGGAGGTTTCCTGAGAACATAAAGCAAATGGCAGAGAATGGCTTCCTGGAGCCGCTTATA CATTATCTTTCCGAAGGTTCCGAGGAGACGCAGATGGAAATGGCAAGTTATTTAGGAGATATTTCTCTGGGACATGAAAGCAAGACTTATGTTGCCAACA GTGCTTCCCCAGCACTCATCAGAATGGTTCGCAGCGGGAATACGCTGATCCGACGAGCAGCGTTCAAAGCGCTAGCTCGAATCTCGTCTTACCACCCTAA TGCGGAGATACTCACCGAGGCAGGAATCCTGCAGATCATGGTCGAAGAGATGTTTTCGAGAAGAATCCACAACGAACCGATGGACTCGAAAGCTGAAGCT GCTGCGATACTCGCAAATATATTCGAGGCAGGAGTCGACGAGGTTCTTCAGAACCTGAAAGTGAACGATTACGGCCACAAAGTAAACTCGGACTATGTTG TGTACAATATCGTCCGGATGGTCAACAACTCGACTCCCGAAGAAGTCAACGTTAACTTAATCAGAATCCTGATGTGTCTCGCCGAGTCAAGCACATCGTT GGCTACGATTGTCTCGGTGGTTAAACAGTCGGAAGCGAGCTACAGTCTGATCGAACTGATCAACAATCCTCACGAAGAGCTAGGCGTTTCGGCCATCAAG CTGCTCGGAAAGCTATCGCCTTATATGGGGCACACGGTAATCGAGAGACTATGCAAGACGAGAGGTTTGCCCGAGAACTTGATCATTAACCAAACTGAAA CAACAAGAATCACAGAGAGGCAAGCAGTTTCAGCATTGTTTTTGGCTAAACTGCCACACAAGAACCTGACACTCAACTTGGCACTTATTGTTGTAGTCCC GAAAATTGTGGTATCGATCGGTCAGATTCAAAGAACCGGAACCGGATCGAGCAGGCACTCAAGTGCTTATCTTGAAGGCCTTGTGGGCGTCCTCGTGAGA TTCACATCCACACTCTACGAGCCGCAGATGCTCTATCTCGCCAGAACCTACGACTTCACGTCTGTGTTCAGCGAACTCCTGACGAAAACATCGAGCGACG AAGTCCAGAGGCTGTCAGCATTCGGGCTGGAGAATCTGTCAGCAGAATCTGTCAACTTGTCAAAACCACCACCAAAGGCCAAAAAACCGAATTCACTCGT GAAAAGCTTCAGCTTTCGAAAGTTCTTATCTTTCAGCTCATCGAAGAAGAATACAAGGACAAGGACCGCGCTGATCTGTCAGGTTCACCGAGGAGTATGC TCCTCGCGGGAAACATTCTGCCTGGTCGAAGCAAAAGCGGTGGAGAGGCTGCTTATGTGCTTGGATCACGAGAATGTTAAGGTCATTGATGCTGCTTTAT CCGCCATATCGACTCTTTTGGATGACAGAGTCGATATCGATAGCAGCGTTGCGTTATTGACCGAAATGAACGCTGCAAGGCAAATCCTACAGGTGTTGAA AGATCAGAGAAGTGAAGCTCTATGGCACAAGTGCTTCTGGGTTTTGGAGAGGTTCCTGTCAATTGGCGGTGACTGTTCCGTTCAAGATATATCGAATGAC AGGTCGTTGCCTGCGGTTTTGATCAGTGCGTATCATCACGGGGATGGCGATACTCGTCAGATGGCCGAGAAGATTCTCGGCCACCTGAACCGGGTGCCTA ACTACAGAACTACCCATTTTACCATGTAG
AA sequence Show only first row Show all	>Lus10013050 pacid=23149876 polypeptide=Lus10013050 locus=Lus10013050.g ID=Lus10013050.BGIv1.0 annot-version=v1.0 MSSLLPQEETEEDEEAEEGEEVHQLRKDEHQVADATARSRSMSLDEDQLLIDAIVESLLASTSDIMESVPYIESEQEIFYETGCYVYRTSFAVMELQTTE NPPENAKEILESLSRSVNQARNLISRCRSDEKDSISDSELRNILLPQLEGAIKSAGEILSNIPSSTYTDHKYAEMAVRSIASEMQNAQFKVSPILHKESE EAIESDLYPIKVEFPRENSWKVSNFPQLHQFLRPTSTTTSQGNRYYYNSASGSSFPEMANHIEPLYDTFCCPLTKQVMEDPVTIQSGLTFERKAIAMWFQ EFENLPEVFCPITEMKLTSRVLTTNVALRTTIEEWKERNEAAKIKVCRAALSLASTASMAIEAVKDLQGICSRKKYNKMQVCNAGILPLLSKFLSHNDRD VRRNDCGSVDLSTVVKLLLSGHQVIKHEALLLSLELARLGSLCKRIGSITGSILMLIRLKYSHSLDSFASEKADEILKCLGRFPENIKQMAENGFLEPLI HYLSEGSEETQMEMASYLGDISLGHESKTYVANSASPALIRMVRSGNTLIRRAAFKALARISSYHPNAEILTEAGILQIMVEEMFSRRIHNEPMDSKAEA AAILANIFEAGVDEVLQNLKVNDYGHKVNSDYVVYNIVRMVNNSTPEEVNVNLIRILMCLAESSTSLATIVSVVKQSEASYSLIELINNPHEELGVSAIK LLGKLSPYMGHTVIERLCKTRGLPENLIINQTETTRITERQAVSALFLAKLPHKNLTLNLALIVVVPKIVVSIGQIQRTGTGSSRHSSAYLEGLVGVLVR FTSTLYEPQMLYLARTYDFTSVFSELLTKTSSDEVQRLSAFGLENLSAESVNLSKPPPKAKKPNSLVKSFSFRKFLSFSSSKKNTRTRTALICQVHRGVC SSRETFCLVEAKAVERLLMCLDHENVKVIDAALSAISTLLDDRVDIDSSVALLTEMNAARQILQVLKDQRSEALWHKCFWVLERFLSIGGDCSVQDISND RSLPAVLISAYHHGDGDTRQMAEKILGHLNRVPNYRTTHFTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68940			Armadillo/beta-catenin-like re...		Lus10013050 [exp]	0	1
					Lus10033269 [exp]	4.8	0.9462
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	5.3	0.9460
AT3G21530			DNAse I-like superfamily prote...		Lus10012772 [exp]	7.1	0.9396
AT1G76360			Protein kinase superfamily pro...		Lus10030743 [exp]	7.9	0.9181
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	10.2	0.9412
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	11.2	0.9437
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	16.7	0.9371
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	17.0	0.9366
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011985 [exp]	17.3	0.9185
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	17.9	0.9149

Compare expression of checked genes

Lus10013050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.