Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37240 60 / 5e-10 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029111 [exp] 801 / 0 AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1) Lus10030582 [exp] 639 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10030907 [exp] 634 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10014017 [exp] 70 / 2e-13 AT2G37240 316 / 1e-109 Thioredoxin superfamily protein (.1) Lus10019900 [exp] 56 / 9e-09 AT2G37240 214 / 7e-70 Thioredoxin superfamily protein (.1) Lus10011727 [exp] 42 / 0.0003 AT5G65840 297 / 1e-101 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G113000 [exp] 604 / 0 AT2G37240 62 / 1e-10 Thioredoxin superfamily protein (.1) Potri.010G136300 [exp] 592 / 0 AT2G37240 62 / 8e-11 Thioredoxin superfamily protein (.1) Potri.006G133100 [exp] 64 / 2e-11 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10013051 pacid=23149805 polypeptide=Lus10013051 locus=Lus10013051.g ID=Lus10013051.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTTTCTATGGAGGACTTTGTAGGAAATGGAGTTCTGAAAGAGCTGCTCCAAAAGCTGTTGCAAGAAGGGTGGGATGATGTCCCAACTTTGA AGATCATGACCGATGAGGACATGGATTCAATCAACCTCACAAGCCGACAAAAGGAGGCTCTGGAGATAAGAACGTACCTACATGATCGAGCTCTGATGTT CTACGCAGACAGAGTAGAGGCATCAAGGCAAAGCTTGCAAGAGCTTCTGGCGCTGAGCAGAACAGACGTGGCATCCCGATTCGGGATGAAACGAGGTCAC GCAGCTCGTTTCCTGGACCGAACCACTGCCTGTACAGAACCATTGAGCAAACCTGACCGAGTCAGGAAACCTCATCGTCCTGCACCATCGAGAAGCGACA GCCTGCTGCAAAGTTTTGGCTCGGTCACCTCGAGAAAGATGGCGACAGCAGCGAGATACTCGGGTTCCTACACGTATAATGACAGATCCATCGAACAGTC GCTGGCCGATTTCAAGATCAAAGATGGGTATGTGTTCAAAGGGGTGATTGCTTCAGGACCAGCCGAGCCTCGGGCGTGTGGCTGCATATCTCCTCCTCCG GTGGTCGACCAGGTTGCTCCGATTTCCGCCATTGAGAACATAACGGTCCAGAAGCTGACTCCTGAGTATAAGATTGGGATGGAGCGGCTGGTGAAGAGCA AAGGACCTCCCATGAAGGCTTCGGAATTGTGGCGCGACAAACCTGCAGTTTTCCTCTGTATCAGACGTCCTGGGTGTGTGATGTGCCGAGCCGAAGCTCA TCAGCTCTACGCTAGAAAGCCTATATTCGACGCAATGGGGGTTCAACTATTTGCAGTTCTTCACGAGCATATCGAGTCGGAGGTACAAGATTTCTGGCCG CGGTACTGGGGAGGAGTGGTACTCTTGGACCGGGGTCTCGAGTTCTTCAAAGCCCTCGGCGGTGGAAGCCTACTGAAGGACATGTTCATATCTGGATTCA TCTTCAATCCCCGGGCGATTTCGAATTACAAACGAGCCAAAGCCATGGGACTCGACCACAACTTCAGAGGTGAAGGTGAGATCAAAGGTGGACTCTTCAT AGTAGGAAGGAAGAAGTCTGGCATCGCTTACCAGTTCGTTGAGAGGAACTTCGGCGATTGGGCTCCGATTGCTGAAGTTTTCCAGATATGCACCAAGTTG CAGAACCATCAGCATGATCAAGGAGAGTCACGAAGATCTTCTCAGGATTATGTCTGA
AA sequence Show only first row Show all	>Lus10013051 pacid=23149805 polypeptide=Lus10013051 locus=Lus10013051.g ID=Lus10013051.BGIv1.0 annot-version=v1.0 MASFSMEDFVGNGVLKELLQKLLQEGWDDVPTLKIMTDEDMDSINLTSRQKEALEIRTYLHDRALMFYADRVEASRQSLQELLALSRTDVASRFGMKRGH AARFLDRTTACTEPLSKPDRVRKPHRPAPSRSDSLLQSFGSVTSRKMATAARYSGSYTYNDRSIEQSLADFKIKDGYVFKGVIASGPAEPRACGCISPPP VVDQVAPISAIENITVQKLTPEYKIGMERLVKSKGPPMKASELWRDKPAVFLCIRRPGCVMCRAEAHQLYARKPIFDAMGVQLFAVLHEHIESEVQDFWP RYWGGVVLLDRGLEFFKALGGGSLLKDMFISGFIFNPRAISNYKRAKAMGLDHNFRGEGEIKGGLFIVGRKKSGIAYQFVERNFGDWAPIAEVFQICTKL QNHQHDQGESRRSSQDYV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37240			Thioredoxin superfamily protei...		Lus10013051 [exp]	0	1
					Lus10007485 [exp]	1.0	0.9232
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10004990 [exp]	4.5	0.9211
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	4.9	0.9148
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	5.1	0.9100
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	5.7	0.9226
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	9.1	0.9230
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10023613 [exp]	9.2	0.8927
AT3G07840			Pectin lyase-like superfamily ...		Lus10003001 [exp]	10.4	0.8882
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	12.2	0.8954
AT1G74790			catalytics (.1)		Lus10033116 [exp]	13.6	0.9197

Compare expression of checked genes

Lus10013051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.