Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68920 310 / 5e-100 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 212 / 1e-63 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G07340 188 / 7e-54 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10120 183 / 4e-53 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 177 / 1e-50 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 178 / 1e-49 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 167 / 2e-47 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT5G50915 164 / 2e-46 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G18300 162 / 3e-45 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G36540 157 / 4e-44 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029110 [exp] 906 / 0 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030908 [exp] 621 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 611 / 0 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012484 [exp] 171 / 1e-48 AT1G10120 202 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003172 [exp] 170 / 1e-48 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006491 [exp] 171 / 3e-48 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040448 [exp] 167 / 1e-47 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10023562 [exp] 166 / 3e-47 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10033120 [exp] 164 / 9e-47 AT5G62610 265 / 9e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136100 [exp] 529 / 0 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.008G113200 [exp] 473 / 1e-162 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 223 / 9e-66 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 200 / 2e-57 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 199 / 7e-57 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G114700 [exp] 182 / 4e-52 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 180 / 2e-51 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G156000 [exp] 177 / 5e-50 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 175 / 3e-49 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.010G040000 [exp] 162 / 1e-46 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013052 pacid=23149844 polypeptide=Lus10013052 locus=Lus10013052.g ID=Lus10013052.BGIv1.0 annot-version=v1.0 ATGGAGATGGACATTAGTGAGAAGGGTAAATCTGATATGGACAAGAGGAATGGTGACAACCCTATGAACTATGATTCATCTGGTGCATTATCTTCTGACT GGCGATTTGGTACGAATGCTGCAGCTCCCATTTTGGTTCCTGGCGATGGTCAAATGACTTCTTGCTCATCTGCCTCTATGGGGGAATCATTTGGTCCTCC TCCTGGTCTTTGGGACCACCAAACTAGTTCACATAACATAGGGTTTTGTGACATTAATATCCAGAACAGCGGTGGTACCGGGACTCCGGTAGGGATGGTA AGAGGTGGTCCTGCCTCTATGAGTTGGAACCAGCCTAGTTCAATGTTGAGGGATAGTGGTATATTCTTGCCAAATGCCGGAATACTTCCCCCAAGCTTAT CTCAGTTTCCTGCTGATCCTGCTTTCATTGAGCGAGCTGCCAGGTTTTCTTGCTTCAACAGTGTAAATTACGGTGATCATATGGCTCACCCTTTTGGGAT CTCTGAACCTCCTATGGGTCTTTACTCTAGAGCAGCTGGAGGGATGATGCAAGTGCTGCCACAAGAGGTATTTGTAGGTAGCGGATTGAAATCATTATCT GGAGGTCCTTCTTTGCATACGGATCATGCCAAAATTGAAGACACCCCTCTTAAGAGTGAGAGGAAAAGCGAGAGCCTTGTTAGATCTCACGATGACGTAA AACCGGGTGGTAATGACTCCGATGAAGCTGAATTTAGCGGTGGTGGTGGTGGTGGTCAAGATGATACTACTATGTTGGAGGCGAATGGTGGAAAATCATC TGCTAAGGGCATCGAGTCCAAGAAAAGGAAAAGGAACGGGCAGGATACAAAGAATGAAGGTACAAAGGGTGGCTCTGAAATTCAACAGAAAGGAGGCAAA AATCAAGGTTCAGCAAATCATAAGGCCTCTGGGAAAAATGGCAAACAGGGATCTCCTCCGCCGAAAGAAGATTATATTCATGTCCGAGCTCGGCGAGGAC AGGCAACTAATAGCCACAGTCTTGCAGAGAGAGTACGAAGGGAGAAGATCAGCGAAAGAATGAAGCTTTTGCAGGACCTTGTGCCTGGTTGCAACAAGGT GACAGGCAAGGCAGTGATGCTGGATGAAATTATCAACTATGTGCAATCACTACAACGCCAGGTCGAGTTTTTGTCGATGAAGCTTGCCACGGTGAATCCA AGGTTGGATTTCAACTTGGAAGGGCTTCTAGCGAAAGATATCCTGTCGAGAGCTATTCCTTCAGCTGGTCTCTCCTTTTCGCCTGATATGCCTATGTCTT ATCATCCTCCATTGCATCCATCTCAACCGGATGGTTTTCCTGTAATGGAGAGTCATCATTCTGACATCCTCCGGCATAGTATCGCTTCTTCAGCCGCAGA ATTCAAGGATCCTGCTCAGCAGCTACCCGGCTCGTGGAACGAAGAGCTCCACAATGTGATGCAGATGTATGCGAGCAATGTTCCTCAAGGTAGCCAAGAG ATTTCGGCAGGCGATATGAAAACCGAACTGTGA
AA sequence Show only first row Show all	>Lus10013052 pacid=23149844 polypeptide=Lus10013052 locus=Lus10013052.g ID=Lus10013052.BGIv1.0 annot-version=v1.0 MEMDISEKGKSDMDKRNGDNPMNYDSSGALSSDWRFGTNAAAPILVPGDGQMTSCSSASMGESFGPPPGLWDHQTSSHNIGFCDINIQNSGGTGTPVGMV RGGPASMSWNQPSSMLRDSGIFLPNAGILPPSLSQFPADPAFIERAARFSCFNSVNYGDHMAHPFGISEPPMGLYSRAAGGMMQVLPQEVFVGSGLKSLS GGPSLHTDHAKIEDTPLKSERKSESLVRSHDDVKPGGNDSDEAEFSGGGGGGQDDTTMLEANGGKSSAKGIESKKRKRNGQDTKNEGTKGGSEIQQKGGK NQGSANHKASGKNGKQGSPPPKEDYIHVRARRGQATNSHSLAERVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP RLDFNLEGLLAKDILSRAIPSAGLSFSPDMPMSYHPPLHPSQPDGFPVMESHHSDILRHSIASSAAEFKDPAQQLPGSWNEELHNVMQMYASNVPQGSQE ISAGDMKTEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	0	1
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	3.5	0.8642
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	5.5	0.8522
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10031976 [exp]	6.2	0.7791
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	6.2	0.8245
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	8.7	0.8138
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	10.7	0.8069
AT3G25585		AAPT2, ATAAPT2	aminoalcoholphosphotransferase...		Lus10034410 [exp]	11.0	0.7864
AT3G45600		TET3	tetraspanin3 (.1)		Lus10038473 [exp]	11.8	0.7685
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10014593 [exp]	15.0	0.7619
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	15.3	0.7876

Compare expression of checked genes

Lus10013052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.