Plant FIBer expression Database

Lus10013053 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68910 417 / 1e-139 WIT2 WPP domain-interacting protein 2 (.1.2.3)
AT5G11390 258 / 5e-77 WIT1 WPP domain-interacting protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029109
[exp]
992 / 0 AT1G68910 487 / 1e-166 WPP domain-interacting protein 2 (.1.2.3)
Lus10034351
[exp]
257 / 1e-76 AT5G11390 444 / 1e-146 WPP domain-interacting protein 1 (.1)
Lus10005102
[exp]
203 / 5e-59 AT5G11390 300 / 5e-95 WPP domain-interacting protein 1 (.1)
Lus10005101
[exp]
59 / 1e-09 AT5G11390 91 / 2e-21 WPP domain-interacting protein 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G135900
[exp]
504 / 5e-173 AT1G68910 473 / 8e-161 WPP domain-interacting protein 2 (.1.2.3)
Potri.017G106400
[exp]
307 / 1e-95 AT5G11390 510 / 2e-172 WPP domain-interacting protein 1 (.1)
PFAM info
Representative CDS sequence
>Lus10013053 pacid=23149879 polypeptide=Lus10013053 locus=Lus10013053.g ID=Lus10013053.BGIv1.0 annot-version=v1.0
ATGAAACACCATGCTGTTGACGAAGAATTCGAGACGACGATTGAAGTTAATGAGCCAACCGGAACATCATCAATTCCTGTCATGGACACCTTAGCCAAAG
TGGATTCGGACTTGAATTGCTCGTCCGCGAAATTAGGAACCTTGCATGAGATTTTAATGCATCTGCTTGCTTGGGACAACGATCGCGAGGCGATAGCTGC
ATACAGCTACATCTCAGCAACTTCGATAGAGAAGGCGTTGGAACTCGATCTCCTTTCCGGAATCTTGGATTCCGAGGTGAAAGGGGTGGAGACTTTCATG
GACTGCATCCAAGCAGAGTTAGTCAGTGCTCGTTACGAAATATCTGCACCACCAAATGCATCGAGTATGATAGAAGAGCGGTTACTTGAGTGCGAAGAAT
CGTTCAAGAAAGCTCAAGATCAAGTCCTGGATGTGAAGATGAAATCGACCAAGTTACAGCGAGCCTTCTTAGCTCTCAGACACGAGAACTTGGAGGATGC
TAAGGCAATTGCATTATCCCTCACTGGCAAATACGTTGAGGCGAATTCGAAGAAGCAGACTGTCGAGCAGCACAGACACATCCTGCGGATGTTGGACAAG
TCGCTAGTAAGAGAGCTAGAACTAGAGAAGAAGCTCTCCGAGTCGAAGCAGAGCGAAGAGCAGATGAAGCTGAAGCTACATTACACAGAACAGGTCGTGT
TTCGGATGGAAGAAGCGGGAGAAGTAATACTGGGAAGGTTCTTAGAAGCTGAAAATGCTGCTGAAGTGTTTATGGGAGTTTCGAAGGAATTAGTAGGGCG
GCATCAGATCGTTCAGTTCAACTTGAACGGTTCGTTCCAGCGAGAATCCGAGTTAAGATCACAGCTCCAGGATTGCATCCACAAGCTGGACGCCAGAGAT
GCTACTGTGCGAAAACTCGAGATCAGCATTGCAGAATATGTCACCAAAAGTAACGAACTGCCCGAGTTGAAAGACCGAGTGAGGTCACTCGAAGAACAGG
TGCGGAAAACCGAGTTGAGTCTCAAGACTGCAAAGTCTGTACACGAAGCAGACCAAGAGCAGCTCGTCGAAATGGATAATCTCGTCGAGTCTCTAAGGGA
GAACATCTTCGAAGCGGAGACCAGGGCCGAGACTGCTGAGACTAAAGTTAGCCAGTTGACAGATACAAATATTGAACTCTCCGAAGAAATCAACTTTCTC
AAGAGTGGGAGAGACAGTGATGCCAAAAAGGTAAGTTCGCTTGAGAAGCAGTTGATGGAGCTCGAAATCCAAGTGCAGCATTCGAAAGTTTCGTCCGAAG
CGAGTCAAGAGCAGCAGAATATGCTGTATTCAGCAATTTGGGATATGGAGACTTTGATCGAAGATCTCAAATCAAAGGTCTCCAAGGCCGAAAGCAAGCT
GGAGAATTCCGAGGAGCAATGTATTGTGTTGTCCGAAATGAATGCTGACCTTAACGACGAGATAAGCTTGTTAAGGACTAGGATTCGGATGTTGGAAAAA
TCGTTGGATCGAGCTAACAACTTGAGAGCTGAGAGTGCAGAAGATATCAAGACGAGGACCAAGATCGTCATGGATATGGTATTCCAACTCGCTAAAGAAC
GAGAACGAATCCAGGATCAGCTGCTTTCTCTTGGAAAGGAGAATGAAACATTGAAGGCAAAGCTGAGTTTGATGCAAAAGTACGATTTCCTCAACTCTTG
GAGTGGAGACAATCTCGGTCCTATCTCTTCCGTGAACGACTTGTCGAAGGAGACGACTGCGAATTGA
AA sequence
>Lus10013053 pacid=23149879 polypeptide=Lus10013053 locus=Lus10013053.g ID=Lus10013053.BGIv1.0 annot-version=v1.0
MKHHAVDEEFETTIEVNEPTGTSSIPVMDTLAKVDSDLNCSSAKLGTLHEILMHLLAWDNDREAIAAYSYISATSIEKALELDLLSGILDSEVKGVETFM
DCIQAELVSARYEISAPPNASSMIEERLLECEESFKKAQDQVLDVKMKSTKLQRAFLALRHENLEDAKAIALSLTGKYVEANSKKQTVEQHRHILRMLDK
SLVRELELEKKLSESKQSEEQMKLKLHYTEQVVFRMEEAGEVILGRFLEAENAAEVFMGVSKELVGRHQIVQFNLNGSFQRESELRSQLQDCIHKLDARD
ATVRKLEISIAEYVTKSNELPELKDRVRSLEEQVRKTELSLKTAKSVHEADQEQLVEMDNLVESLRENIFEAETRAETAETKVSQLTDTNIELSEEINFL
KSGRDSDAKKVSSLEKQLMELEIQVQHSKVSSEASQEQQNMLYSAIWDMETLIEDLKSKVSKAESKLENSEEQCIVLSEMNADLNDEISLLRTRIRMLEK
SLDRANNLRAESAEDIKTRTKIVMDMVFQLAKERERIQDQLLSLGKENETLKAKLSLMQKYDFLNSWSGDNLGPISSVNDLSKETTAN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G68910 WIT2 WPP domain-interacting protein... Lus10013053
[exp]
0 1
AT1G03590 Protein phosphatase 2C family ... Lus10031631
[exp]
1.4 0.8979
Lus10006286
[exp]
2.2 0.8827
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Lus10019177
[exp]
3.5 0.8833
AT5G10110 unknown protein Lus10022498
[exp]
4.1 0.8627
AT1G20050 HYD1 HYDRA1, C-8,7 sterol isomerase... Lus10032965
[exp]
4.2 0.8709
AT4G14570 AtAARE, AARE acylamino acid-releasing enzym... Lus10039405
[exp]
4.9 0.8710
AT5G61240 Leucine-rich repeat (LRR) fami... Lus10037108
[exp]
5.7 0.8848
AT5G25360 unknown protein Lus10030101
[exp]
6.0 0.8288
AT5G65980 Auxin efflux carrier family pr... Lus10001303
[exp]
6.5 0.8777
AT4G14305 Peroxisomal membrane 22 kDa (M... Lus10011798
[exp]
6.6 0.8897

Lus10013053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.