Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22720 323 / 9e-112 Actin-like ATPase superfamily protein (.1.2) AT2G45270 71 / 3e-14 GCP1 glycoprotease 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029108 [exp] 357 / 2e-127 AT4G22720 352 / 3e-123 Actin-like ATPase superfamily protein (.1.2) Lus10000791 [exp] 68 / 3e-13 AT2G45270 664 / 0.0 glycoprotease 1 (.1) Lus10030285 [exp] 62 / 3e-11 AT2G45270 550 / 0.0 glycoprotease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029200 [exp] 328 / 1e-113 AT4G22720 652 / 0.0 Actin-like ATPase superfamily protein (.1.2) Potri.007G129400 [exp] 207 / 4e-69 AT4G22720 240 / 4e-80 Actin-like ATPase superfamily protein (.1.2) Potri.014G067800 [exp] 65 / 4e-12 AT2G45270 655 / 0.0 glycoprotease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00814 [flax] [poplar] TsaD tRNA N6-adenosine threonylcarbamoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10013054 pacid=23149873 polypeptide=Lus10013054 locus=Lus10013054.g ID=Lus10013054.BGIv1.0 annot-version=v1.0 ATGAAGAAACTAATCGCTCTAGGATTCGAAGGCTCGGCGAACAAGATCGGAGTCGGCGTCGTCGCTTTAGACGGAACAATCCTCTCAAACCCACGACACA CCTACATCACTCCGCCAGGCCACGGCTTCCTCCCTCGAGAAACCGCCCATCACCACCTCCGCCACGTCCTACCCTTAGTCCGAACCGCGCTCGACGCCGC CGGACTGACTCCCGACGATGTCGATTGCATCTGCTACACCAAGGGCCCCGGAATGGGAGCGCCGCTGCAAGTCTCCGCCATTGTCGTCCGTGTCCTGTCC CTGCTCTGGAAGAAGCCGATTGTCGCCGTTAACCACTGCGTCGCCCATATTGAGATGGGCCGGGTCGTCACTGGGGCGCATGATCCGGTTGTGCTCTACG TTAGCGGCGGGAACACTCAGGTGATTGCTTATAGTGAAGGAAAGTATAGGATTTTCGGGGAGACTATTGATATCGCTGTGGGGAATTGTTTGGATCGGTT TGCTAGGGTCTTGCAGCTGTCCAATGATCCTGCCCCTGGCTACAACATTGAGCAGGTGATTGATTATTTGGTATTTGGTGTTTGGATTGAATTGAACTTG GGGATTGTTTCTGATTAG
AA sequence Show only first row Show all	>Lus10013054 pacid=23149873 polypeptide=Lus10013054 locus=Lus10013054.g ID=Lus10013054.BGIv1.0 annot-version=v1.0 MKKLIALGFEGSANKIGVGVVALDGTILSNPRHTYITPPGHGFLPRETAHHHLRHVLPLVRTALDAAGLTPDDVDCICYTKGPGMGAPLQVSAIVVRVLS LLWKKPIVAVNHCVAHIEMGRVVTGAHDPVVLYVSGGNTQVIAYSEGKYRIFGETIDIAVGNCLDRFARVLQLSNDPAPGYNIEQVIDYLVFGVWIELNL GIVSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22720			Actin-like ATPase superfamily ...		Lus10013054 [exp]	0	1
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Lus10005066 [exp]	7.2	0.8294
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	8.5	0.8241
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	10.0	0.8128
AT2G15000			unknown protein		Lus10025365 [exp]	10.8	0.8134
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	16.2	0.8157
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10007494 [exp]	18.0	0.8036
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	18.4	0.8033
AT3G19120			PIF / Ping-Pong family of plan...		Lus10025271 [exp]	19.3	0.8031
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	19.6	0.8042
AT2G15000			unknown protein		Lus10020971 [exp]	19.7	0.8093

Compare expression of checked genes

Lus10013054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.