Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42020 308 / 2e-98 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 303 / 6e-96 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 283 / 3e-88 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G09080 282 / 7e-88 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G09440 282 / 7e-88 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 281 / 2e-87 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G56410 271 / 6e-84 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 255 / 8e-78 HSP70B heat shock protein 70B (.1) AT5G02490 255 / 1e-77 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G49910 184 / 8e-51 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029103 [exp] 409 / 6e-138 AT5G28540 615 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 377 / 1e-124 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 352 / 7e-115 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 336 / 6e-109 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10032430 [exp] 308 / 8e-97 AT5G42020 1033 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10017022 [exp] 299 / 5e-94 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10017306 [exp] 299 / 2e-93 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023043 [exp] 308 / 7e-93 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10003202 [exp] 293 / 5e-92 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G017600 [exp] 310 / 2e-98 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 304 / 4e-96 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 303 / 6e-96 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.010G205700 [exp] 281 / 1e-87 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 281 / 2e-87 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054700 [exp] 278 / 2e-87 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 280 / 5e-87 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 280 / 5e-87 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.013G018000 [exp] 279 / 1e-86 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042600 [exp] 275 / 2e-85 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10013055 pacid=23149850 polypeptide=Lus10013055 locus=Lus10013055.g ID=Lus10013055.BGIv1.0 annot-version=v1.0 ATGGAGATTGAAGGTGGTGTGTTCACTGTATTAGCAACTGGCGGTGATACACATTTGGGAGGCGGGGATTTTGACCAGAGAGTGATGGAATATTTCATTG ATTTGATTAAAAGGAAGTACAAGAAGGATGTACGAGGGGATACTAAGGCTATTGGGAGGCTACGGAGGGAATGCGAGAGGGCGAAGAGGTTACTTAGCGG CCAGATGATGCAAGTGAGGGTTAACATCGATTGCTTTGTTAATGGAATCGATTTCTCGGAGGTGCTTACGAGGGCGAGATTCGAAGATTTGAACTTGGAA CTGTTTGAGAAGACGATGGATATTGTGAAGAGTACTATGAAAGATGCAGAGGTGGAGAAGAGAGAAATCGACGAGGTTGTGCTGGTTGGAGGAAGTAGTA GGATTCCTAAGGTAAGGGAGATGTTGAGAGACATGTTTAATGGGAAGGAGCCTAGCAAAAGTGTGAACCCTGATGAAGCTGTGGCTTATGGTGCTGGTGT TTTAGCAGCCAAACTCAGTGGTGCATTGAATGCTATTCTTTATGATGTTACTTTACGTGACATAACTCCTTTGAGCTTGGGAATTGCTGATAAATGTTAT GTGATGGCGGTAATTGTTCCAAGGAACACACCTATTCCCACCAGAATGACTAAGGAGTTCTGTAATGCAAAGGATCATCAGACCTCTATCCCAATCAATG TTGTTGCTGCAAGGGAAAAGAACAATTCTGCAAGATCCAACTCTATAAGCATCAGTAGCTACAAAGGTAATTTGTCAAAAGCGGAGATTGAAACGATGAT AAGTACTGCGAAGAGGATGTCGCAGCAAGACGAGAAAGCCAAGGCCCGTGCTCAAGCCAGGAATCAGCTGGAGAGGTTCATCTACGATGTCAAGAATCGG TTGAGTTGGGATGACAAGAAAAAGATCGAGAGCGAACTTGAAGAAGCTTCAGTTTGGCTGGGTGGGAACCAGCACTCTGCTACCAAGGAGGACTATGAGA ATAAACTCAAAGCAATCCGAGATAGAGTAGCAGCTTTGCATTTAAGTCTGTACGTACGGGAGAAAATAACTAGCTACAACTGCATTGTGCCTCGTGTTCA TTGTTCTCTCGCGGGGGAGAAACCGATCGACCTTCATTCTTGTTCCGGTTGCGTTCCTCTTCCTTTCATGGTGATTGAAAGATGTCTTCTTTCGAAGATG GCCATTTCTAACCCCTATATAGTGGTGACTCATGTTCATCTATATATAGTTTCTGGGGGAGAAGGCAAACTTGATCCATGGTCTACTGTCGAGGATGTGG AAGATAGAGCCAATGGTAGCATAGCAATTCCAGGGCCATTCCAGCGAGCAGTTGTTTATGATATTGATGATTGTGATACAATCCGAGTAAATGATTGTGG GCTCGGAAATTGTAACGGCAAGAAGAATAGCTTCTAG
AA sequence Show only first row Show all	>Lus10013055 pacid=23149850 polypeptide=Lus10013055 locus=Lus10013055.g ID=Lus10013055.BGIv1.0 annot-version=v1.0 MEIEGGVFTVLATGGDTHLGGGDFDQRVMEYFIDLIKRKYKKDVRGDTKAIGRLRRECERAKRLLSGQMMQVRVNIDCFVNGIDFSEVLTRARFEDLNLE LFEKTMDIVKSTMKDAEVEKREIDEVVLVGGSSRIPKVREMLRDMFNGKEPSKSVNPDEAVAYGAGVLAAKLSGALNAILYDVTLRDITPLSLGIADKCY VMAVIVPRNTPIPTRMTKEFCNAKDHQTSIPINVVAAREKNNSARSNSISISSYKGNLSKAEIETMISTAKRMSQQDEKAKARAQARNQLERFIYDVKNR LSWDDKKKIESELEEASVWLGGNQHSATKEDYENKLKAIRDRVAALHLSLYVREKITSYNCIVPRVHCSLAGEKPIDLHSCSGCVPLPFMVIERCLLSKM AISNPYIVVTHVHLYIVSGGEGKLDPWSTVEDVEDRANGSIAIPGPFQRAVVYDIDDCDTIRVNDCGLGNCNGKKNSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10013055 [exp]	0	1
					Lus10020194 [exp]	1.0	0.9969
					Lus10010397 [exp]	1.4	0.9919
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	1.7	0.9905
					Lus10014195 [exp]	2.8	0.9844
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	4.5	0.9652
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	4.6	0.9552
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	5.5	0.9524
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	6.9	0.9499
AT2G16460			Protein of unknown function (D...		Lus10041812 [exp]	8.1	0.9607
AT5G13825			unknown protein		Lus10000042 [exp]	9.8	0.9535

Compare expression of checked genes

Lus10013055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.