Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30520 770 / 0 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G67385 383 / 6e-126 Phototropic-responsive NPH3 family protein (.1) AT5G48800 350 / 7e-113 Phototropic-responsive NPH3 family protein (.1) AT1G30440 312 / 5e-98 Phototropic-responsive NPH3 family protein (.1) AT2G47860 304 / 3e-95 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT1G03010 299 / 4e-93 Phototropic-responsive NPH3 family protein (.1) AT5G03250 295 / 4e-92 Phototropic-responsive NPH3 family protein (.1) AT5G13600 293 / 1e-91 Phototropic-responsive NPH3 family protein (.1) AT3G08570 290 / 8e-90 Phototropic-responsive NPH3 family protein (.1) AT5G64330 290 / 2e-88 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029102 [exp] 1099 / 0 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10025928 [exp] 359 / 1e-116 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 320 / 8e-101 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 313 / 3e-98 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 309 / 5e-97 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 309 / 6e-97 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 304 / 8e-95 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 303 / 1e-94 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 303 / 2e-94 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159000 [exp] 837 / 0 AT2G30520 846 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.019G131600 [exp] 810 / 0 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.007G053200 [exp] 410 / 2e-136 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 372 / 2e-121 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 329 / 7e-105 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 320 / 2e-101 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 313 / 2e-98 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 307 / 2e-96 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 306 / 5e-96 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 305 / 3e-95 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10013057 pacid=23149883 polypeptide=Lus10013057 locus=Lus10013057.g ID=Lus10013057.BGIv1.0 annot-version=v1.0 ATGGCTTCCCCTGTCAGAACCAACAGCAGAGTCTCCCTCGCCATGGAAAGAACTGGCCAATGGATCTTCTCTCAGGAAATCCCGACGGACGTCCTGATCG ACGTCGGCGAAGCCAACTTCTCCCTCCACAAGTTCATGCTGGTGGCCAAGAGCAACTACATAAGAAATCTCATCATCGACTCCAAAGAAGCCGACCTCAC CAGAATCGACCTTTCCGACATCCCCGGCGGCCCTGAAATCTTCGAAAAGGCCGCCAAGTTCTGCTACGGCGTCAACTTCGAGATCACCGTCCACAATGTC GCTGCTCTGCGATGCGCCGCTGAGTATCTCCAGATGACCGACGCCTACTGCGACGGCAACCTCGCCACCCGGACCGACGACTTCCTCTCTCAGGTCGCCC TCTCCAGCCTCTCTGGCGCCGTCGTCGTGCTAAAGTCCTGCAAAGATCTACTCCCCCTGGCTAAGGATCTGAAGATCATCCAGCGCTGTGTCGAAGTCAT CAGCGTCAAGGCTTGCAACGAGGTGAACTTTCCGACACGGTCGCCGCCGAACTGGTGGACGGACGAGCTGTCGATTCTCGACATCGAATCCATCTCGAGG ATAATCCCAGCAATGAAGCAACGAGGAGCAAAGCCGATGACTTTATCAAGCTTACTCGTGACATACACAGAGAGAAACCTCAGGGACCTCGTTCGTGACC ATTCGGGTACCGGGTCGAAATCGTTCAACCCGGATTTCCCCGACCACGATTCCGAGCTCCGAGCTCACCAAAGAGAGCTTCTTCAATCCATAGTCTCCTT ACTCCCCTCCGAAAAGGCTGCTTTCCCTGTTCATTTCCTCTGCTGCCTCCTCCGATCAGCGATCTTTCTCAAGGCATCCATTGCCTGCAAGAACGAGCTC GAAAAACGGGTTGCAGCGATTCTCGAGCATGTGACGGTGGATAATCTGCTGGTGTTGTCTTTCACCTACGACGGGGAGAGGCTGTTTGAGCTGGAGAGTG TGAGGAGGATTGTTTCAGGGTTTGTGGATAAGGAGAAGAACGTGGGGATATTCAATGGTGGTGGGGATTTTAAAGAGTCGTATTCGACTGGTATGCAGAG AGTTGCCAAGACTGTGGATGCTTATCTTGGAGAGATCGCACCTCATGCTGAACTTACCATCGCTAAGTTCAATGGGATTGCTGTTCTTGTTCCTAAAGCC TCCAGGAAGGTTGATGATGACCTCTACCGCGCCATTGACATCTACCTCAAGGCACATCCGGACCTTGACGAGATAGAGAGGGAGAAAGTATGCAGCGTGA TGGACCCATTAAAGCTAACATACGAAGCTCGACTCCACGCTTCCCAGAACAAACGGCTACCAGTCCAAATCGTCCTCCACACACTCTACTTCGACCAGCT GCAGCTGCGGAGCGGAGCCACCACTACAGATCAGAGCCGCTCATGTACGCCGCTGATGGCCTCAGCCACGGCCACGAAGAATCAGTTACAGACGGATCTG ACGCTGGTGAGAGAGAACGAGGCGCTGAGAGCAGAGCTAATGAAGATGAAGATGTTCATCACGGATATCCAGAAGAGTGGCAGTCATGGAGGGAAGTCTG CTGCAAGTTCCAGCAGCAAGAAAGGGACTTTCTTTTCGTCCATGTCCAGAACTCTTGGAAAGTTGAATCCTTTCAAACACGGGTCGAAAGATACTTCGAA TATCGTTGACGATGGTGGGATCGACATTACCAAGCCCAGGAAGAGAAGGTTTTCGATTTCGTAA
AA sequence Show only first row Show all	>Lus10013057 pacid=23149883 polypeptide=Lus10013057 locus=Lus10013057.g ID=Lus10013057.BGIv1.0 annot-version=v1.0 MASPVRTNSRVSLAMERTGQWIFSQEIPTDVLIDVGEANFSLHKFMLVAKSNYIRNLIIDSKEADLTRIDLSDIPGGPEIFEKAAKFCYGVNFEITVHNV AALRCAAEYLQMTDAYCDGNLATRTDDFLSQVALSSLSGAVVVLKSCKDLLPLAKDLKIIQRCVEVISVKACNEVNFPTRSPPNWWTDELSILDIESISR IIPAMKQRGAKPMTLSSLLVTYTERNLRDLVRDHSGTGSKSFNPDFPDHDSELRAHQRELLQSIVSLLPSEKAAFPVHFLCCLLRSAIFLKASIACKNEL EKRVAAILEHVTVDNLLVLSFTYDGERLFELESVRRIVSGFVDKEKNVGIFNGGGDFKESYSTGMQRVAKTVDAYLGEIAPHAELTIAKFNGIAVLVPKA SRKVDDDLYRAIDIYLKAHPDLDEIEREKVCSVMDPLKLTYEARLHASQNKRLPVQIVLHTLYFDQLQLRSGATTTDQSRSCTPLMASATATKNQLQTDL TLVRENEALRAELMKMKMFITDIQKSGSHGGKSAASSSSKKGTFFSSMSRTLGKLNPFKHGSKDTSNIVDDGGIDITKPRKRRFSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10013057 [exp]	0	1
AT5G07800			Flavin-binding monooxygenase f...		Lus10015731 [exp]	1.4	0.8760
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001169 [exp]	6.5	0.8773
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	21.0	0.8562
AT1G68260			Thioesterase superfamily prote...		Lus10035152 [exp]	21.9	0.8615
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10037891 [exp]	22.9	0.8676
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10027966 [exp]	26.1	0.8378
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	38.9	0.8523
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	41.7	0.8427
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10038601 [exp]	52.9	0.8333
AT1G56050			GTP-binding protein-related (....		Lus10031789 [exp]	57.2	0.8325

Compare expression of checked genes

Lus10013057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.