Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30530 141 / 2e-42 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT1G13600 136 / 3e-40 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT2G04038 126 / 9e-37 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT5G38800 126 / 2e-36 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT5G15830 112 / 5e-31 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT1G68880 93 / 6e-24 bZIP ATBZIP basic leucine-zipper 8 (.1) AT5G60830 74 / 3e-16 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT2G18160 73 / 4e-16 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT1G75390 67 / 3e-14 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT3G62420 66 / 1e-13 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029101 [exp] 325 / 4e-114 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 82 / 7e-19 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10011557 [exp] 74 / 1e-16 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10028333 [exp] 70 / 1e-14 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10019273 [exp] 69 / 3e-14 AT2G22850 94 / 2e-23 basic leucine-zipper 6 (.1.2) Lus10024279 [exp] 68 / 4e-14 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10041780 [exp] 67 / 1e-13 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10007726 [exp] 66 / 2e-13 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1) Lus10001347 [exp] 65 / 4e-13 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106700 [exp] 165 / 1e-51 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1) Potri.008G113400 [exp] 165 / 3e-51 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.010G135200 [exp] 163 / 3e-50 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.004G111100 [exp] 157 / 2e-48 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.015G047700 [exp] 84 / 6e-20 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.007G006900 [exp] 84 / 2e-19 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.014G007100 [exp] 81 / 6e-19 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.004G158200 [exp] 80 / 1e-18 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.009G119700 [exp] 77 / 1e-17 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.014G013400 [exp] 76 / 2e-17 AT1G59530 77 / 8e-19 basic leucine-zipper 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10013059 pacid=23149809 polypeptide=Lus10013059 locus=Lus10013059.g ID=Lus10013059.BGIv1.0 annot-version=v1.0 ATGTTGTCATTCGGAGACCATCAGTTTGCCGGAGGACTTCATTTGCTCCCCCACGAACATTCATTCGTGCAAGACTATTTTCCTCCCCCTCATACATCGG TCTCATCAGCCAGATTCCTTCATGGCGACACGTTCCCTGTGAACATGCACAACATGAGCATCCACGACTACATAATCAACCCGTCAGGCGTCCACCAGAA CAACAACAACAACAACTGCAACTACTCGCCGTCTTCTTTGTCCTCGTCGACCTCGGACGAGGCCGACGAGCAACAGGTGAGGATAATCGACGAGAGGAAG CAGAGGAGGATGATATCGAACAGGGAGTCGGCGAGGAGGTCGAGGATGCGGAAGCAGAAGCACCTCGACGAGTTGTGGTCCCAGGTCGTCCGGCTCAGAA ACGAGAACCACAGCCTGCTCGACCGGTTGAACCACGTGTCCGAGTCCCACGACCGGGTCGTGGAGGAGAATGCTCGGCTCAAGGAGGAAACCTCCGGGCT GAGGCAGCTGCTGACCGACTTGCCGATCGGGAGTCCCTACAGTAATGAATCGGCGGTGTTGGCGCTAAGGGAGCTGGACGACGTCGTTAGGGCCGATCAT CATCAGTCTTCCTCTAACGATAGTTCCATTGCCAGCTCTGTAGACTTGCTTCTCTGA
AA sequence Show only first row Show all	>Lus10013059 pacid=23149809 polypeptide=Lus10013059 locus=Lus10013059.g ID=Lus10013059.BGIv1.0 annot-version=v1.0 MLSFGDHQFAGGLHLLPHEHSFVQDYFPPPHTSVSSARFLHGDTFPVNMHNMSIHDYIINPSGVHQNNNNNNCNYSPSSLSSSTSDEADEQQVRIIDERK QRRMISNRESARRSRMRKQKHLDELWSQVVRLRNENHSLLDRLNHVSESHDRVVEENARLKEETSGLRQLLTDLPIGSPYSNESAVLALRELDDVVRADH HQSSSNDSSIASSVDLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Lus10013059 [exp]	0	1
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10034465 [exp]	7.5	0.8262
AT5G43830			Aluminium induced protein with...		Lus10006624 [exp]	15.5	0.8442
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	22.4	0.8285
AT2G32850			Protein kinase superfamily pro...		Lus10003916 [exp]	33.6	0.7740
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10005819 [exp]	59.9	0.7860
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10025174 [exp]	83.1	0.7553
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	99.7	0.7816
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	142.7	0.7641
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	143.5	0.7434
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10006192 [exp]	146.3	0.7504

Compare expression of checked genes

Lus10013059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.