Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12740 147 / 7e-40 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G48000 129 / 3e-33 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT1G55940 123 / 1e-30 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT3G44970 121 / 3e-30 Cytochrome P450 superfamily protein (.1) AT1G78490 112 / 6e-27 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT3G30180 98 / 3e-22 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G14400 96 / 7e-22 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT5G45340 97 / 1e-21 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT5G05690 95 / 2e-21 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 96 / 3e-21 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029100 [exp] 202 / 3e-61 AT1G12740 174 / 5e-54 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10024495 [exp] 157 / 4e-43 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10042593 [exp] 136 / 9e-35 AT4G02780 808 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10028628 [exp] 131 / 8e-34 AT1G12740 360 / 9e-121 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10003369 [exp] 122 / 2e-32 ND / Lus10000825 [exp] 117 / 1e-30 ND / Lus10017839 [exp] 120 / 4e-30 AT1G12740 640 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10029539 [exp] 112 / 2e-29 AT3G56570 45 / 7e-06 SET domain-containing protein (.1) Lus10005762 [exp] 117 / 9e-29 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122500 [exp] 166 / 1e-46 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G109100 [exp] 158 / 1e-43 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G143600 [exp] 155 / 2e-42 AT1G12740 475 / 3e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270700 [exp] 152 / 2e-41 AT1G12740 455 / 1e-157 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G183800 [exp] 151 / 4e-41 AT1G12740 476 / 1e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270800 [exp] 151 / 5e-41 AT1G12740 488 / 2e-170 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 149 / 2e-40 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270500 [exp] 149 / 2e-40 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270600 [exp] 149 / 3e-40 AT1G12740 441 / 5e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G204100 [exp] 148 / 4e-40 AT1G12740 468 / 9e-163 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10013060 pacid=23149875 polypeptide=Lus10013060 locus=Lus10013060.g ID=Lus10013060.BGIv1.0 annot-version=v1.0 ATGGAGGTTTTGTGCTGGTTTTTACAGGAAAAGCTCGAAAAAAATCGTGGAAATCGAGTTTGGGGAAGAATGCTTTCTCTTTCCTCCAACTTCCCTTTTT ATAGTAGCAGCCGGATTTGGAGGGTGCACGCCGTGCACCTTTCTAAGGTGTCCATTCCTTGTATCAAAAGCAGGAGAACGGCGTGCAGTGGTGCACGCCG TGCTGCTTCAATTCTTCTCCATCCTGCGACGCAAAATGGGAAGAACGGCGTGCAGTGGTGCACGTCGTGCCTTTGGTTTGAGGCCGTGCTCTGGAGTTCC TTTATGGACTGCACGGCGTGCAGTCTCTCTGCTGCGCCAATTCCATTCTCGACTTCTTTTTTCGAACTTCAATCGCTCTTCACACCACACCCTTGGCTTT ATGGTCAGATCACCTATCTCCATAGTACCTTTGTAACTAGTTACTGGGTTTTCAGCTGGAGGAATCCCAGATGCAACAATGGTGGCAAATTACCACCTGG GTCTATGAGTTTTCCTCTCATTGGTGAAACCATCCAGTTTCTTCTTCCTAGCAACTCGATTGACACCCCTGCCTTCATCAAGGACAGGAAGAGGCTTAAG GCAATCATAGCTGACATTGTGGAGAGCAGAAAGAGATCTCCAAGAGATGAGAGAGAAGATTATCTCGACGACATTCTCGCAACGATGCAGAAAGAAGATT TAGTCTTGACCGATGACTTCCTCGTTACAGTGATGTTTGGTCTCTCACTTGCTAGTTTCGAGGCGGTATTTTCTACCATTGTCGTCGCCCTCAAGTTTCT ATCGGATAACCCTCTAAACATCCGAAAATTACAGGTAATTAAAGAATCCTTACGAATGTCAAGTGTTGCTCCTGGAATTCTGAGGAAGGCACTCACAGAT ATTGATGTAGATGGTAAGTTAAGGAAATTAGAACGAATTCCAAAAGGGTGGGCAGTATTGGTGATTCCCTCTGCGATCCAATTGAGTTCGACAGCTTACG AGGATCCCCTTTCGTTTAATCCGTCATGTTGGGAGGGCATGAGTGAGAGGGACTTTGCACAGAAGTTCATAGCATTTGGTGGAGGAGCAAGATCGTGTTC CGGATCTGTGTTAACTAAGGCTCTAATGGCCATATTCCTCCACGTTCTTGTCACAATTTACAGCTTTGTACATTAA
AA sequence Show only first row Show all	>Lus10013060 pacid=23149875 polypeptide=Lus10013060 locus=Lus10013060.g ID=Lus10013060.BGIv1.0 annot-version=v1.0 MEVLCWFLQEKLEKNRGNRVWGRMLSLSSNFPFYSSSRIWRVHAVHLSKVSIPCIKSRRTACSGARRAASILLHPATQNGKNGVQWCTSCLWFEAVLWSS FMDCTACSLSAAPIPFSTSFFELQSLFTPHPWLYGQITYLHSTFVTSYWVFSWRNPRCNNGGKLPPGSMSFPLIGETIQFLLPSNSIDTPAFIKDRKRLK AIIADIVESRKRSPRDEREDYLDDILATMQKEDLVLTDDFLVTVMFGLSLASFEAVFSTIVVALKFLSDNPLNIRKLQVIKESLRMSSVAPGILRKALTD IDVDGKLRKLERIPKGWAVLVIPSAIQLSSTAYEDPLSFNPSCWEGMSERDFAQKFIAFGGGARSCSGSVLTKALMAIFLHVLVTIYSFVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	0	1
					Lus10019151 [exp]	1.0	0.9991
					Lus10012079 [exp]	2.0	0.9956
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10039087 [exp]	3.0	0.9932
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	3.5	0.9924
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10023446 [exp]	4.5	0.9904
					Lus10009892 [exp]	6.5	0.9831
AT5G44390			FAD-binding Berberine family p...		Lus10042382 [exp]	7.4	0.9628
AT4G32110			Beta-1,3-N-Acetylglucosaminylt...		Lus10042384 [exp]	7.5	0.9753
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	7.5	0.9714
AT2G40290			Eukaryotic translation initiat...		Lus10024444 [exp]	7.5	0.9548

Compare expression of checked genes

Lus10013060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.