Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029097 [exp] 239 / 4e-82 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G113800 [exp] 57 / 8e-11 ND / Potri.010G134800 [exp] 56 / 2e-10 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013062 pacid=23149796 polypeptide=Lus10013062 locus=Lus10013062.g ID=Lus10013062.BGIv1.0 annot-version=v1.0 ATGTCTTCTCTCTTTGCAGTGTTCATCATTCCACATTTGTTCTCTTGCCTTTCTTCTCTAGCTACAAGGATGAATTCTTCTTCCCATGTTCTGGGAAGTT CAAAGAATTTGAGTGGGACTAAAGCCATTGAGTCTGGATGGACAGACTATCTTGGCTCCTGGTGTTATGAAGATGAAGATTGCATGCATAAAAAGCAAGT GAATCACAAGAATACTGGCTATGGCTATGGAAGTAATGAAGAAGAGGATGATGAAGGAGAGAGCGATGACTCAATGGTCTCAGATGCCTCATCTGGCCCA AGTCATTCTGAACTTCCAAGCACCCAAAAGAAGGCTGTGTTTTGCTCATCAAGGAAAGACCATAAATTTGGGAAGCAAAGAGATGAAGCAAGGATCAAGG TGGATAGAGAAGAGTGCATGGTATATGCAAAAAGTGCAGCTAGCCACAATGGATTGAAGGTCCAGAAAACCAAGAAGATGGAGCCTAAAACAGAGAAGGT CTAA
AA sequence Show only first row Show all	>Lus10013062 pacid=23149796 polypeptide=Lus10013062 locus=Lus10013062.g ID=Lus10013062.BGIv1.0 annot-version=v1.0 MSSLFAVFIIPHLFSCLSSLATRMNSSSHVLGSSKNLSGTKAIESGWTDYLGSWCYEDEDCMHKKQVNHKNTGYGYGSNEEEDDEGESDDSMVSDASSGP SHSELPSTQKKAVFCSSRKDHKFGKQRDEARIKVDREECMVYAKSAASHNGLKVQKTKKMEPKTEKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013062 [exp]	0	1
					Lus10029097 [exp]	1.0	0.9464
AT3G11900		ANT1	aromatic and neutral transport...		Lus10017224 [exp]	6.9	0.8004
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	15.0	0.7922
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	16.2	0.8516
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	20.1	0.8464
					Lus10040269 [exp]	24.3	0.7847
AT5G25330			Core-2/I-branching beta-1,6-N-...		Lus10002919 [exp]	24.9	0.7972
AT1G47740			PPPDE putative thiol peptidase...		Lus10003951 [exp]	27.3	0.8020
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10016037 [exp]	28.8	0.8229
AT4G30845			unknown protein		Lus10026098 [exp]	30.7	0.8240

Compare expression of checked genes

Lus10013062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.